View source: R/getRepresentativeNetworks.R
Outputs representative networks for clades/subpopulations larger than a size filter (very small subpopulations are not considered in downstream analyses)
1 2 | getRepresentativeNetworks(sampleIDs, dim_subset, SubpopSizeFilter,
num_networkEdge)
|
sampleIDs |
sampleID vector |
dim_subset |
a string vector of string names to subset the data columns for PAC; set to NULL to use all columns |
SubpopSizeFilter |
the cutoff for small subpopulations. Smaller subpopulations have unstable covariance structure, so no network structure is calculated |
num_networkEdge |
the number of edges to draw for each subpopulation mutual information network |
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