refineSubpopulationLabels: Refines the subpopulation labels from PAC using network...
In PAC: Partition-Assisted Clustering and Multiple Alignments of Networks

View source: R/refineSubpopulationLabels.R

Refines the subpopulation labels from PAC using network alignment and small subpopulation information. Outputs a new set of files containing the representative labels.

1 2	refineSubpopulationLabels(sampleIDs, dim_subset, clades_network_only, expressionGroupClamp)

`sampleIDs`	sampleID vector
`dim_subset`	a string vector of string names to subset the data columns for PAC; set to NULL to use all columns
`clades_network_only`	the alignment results from MAN; used to translate the original sample-specific labels into clade labels
`expressionGroupClamp`	clamps the subpopulations into desired number of expression groups for assigning small subpopulations into larger groups or their own groups.