getAverageSpreadOf2SubpopClades: Calculate the (global) average spread of subpopulations in...
In PAC: Partition-Assisted Clustering and Multiple Alignments of Networks
Description
Usage
Arguments
Value
View source: R/getAverageSpreadOf2SubpopClades.R
Description
Calculate the (global) average spread of subpopulations in clades with 2 subpopulations on the constellation plot.
Usage
1
getAverageSpreadOf2SubpopClades(tsneResults, pacman_results)
Arguments
tsneResults
t-SNE output of clade centroids' embedding.
pacman_results
PAC-MAN analysis result matrix that contains network annotation, clade IDs and mean (centroid) clade expression levels.
Value
Returns global average of 2-subpopulation clade spread on the constellation plot.
PAC documentation built on Feb. 18, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/getAverageSpreadOf2SubpopClades.R
Description
Calculate the (global) average spread of subpopulations in clades with 2 subpopulations on the constellation plot.
Usage
1 | getAverageSpreadOf2SubpopClades(tsneResults, pacman_results)
|
Arguments
tsneResults |
t-SNE output of clade centroids' embedding. |
pacman_results |
PAC-MAN analysis result matrix that contains network annotation, clade IDs and mean (centroid) clade expression levels. |
Value
Returns global average of 2-subpopulation clade spread on the constellation plot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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