MAN: Creates network alignments using network constructed from...
In PAC: Partition-Assisted Clustering and Multiple Alignments of Networks
Description
Usage
Arguments
Value
Description
Creates network alignments using network constructed from subpopulations after PAC
Usage
1
MAN(sampleIDs, num_PACSupop, smallSubpopCutoff, k_clades)
Arguments
sampleIDs
sampleID vector
num_PACSupop
number of subpopulations learned in PAC step for each sample
smallSubpopCutoff
Population size cutoff for subpopulations in clade calculation. The small subpopulations will be considered in the refinement step.
k_clades
number of clades to output before refinement
Value
clades_network_only the clades constructed without small subpopulations (by cutoff) using mutual information network alignments
PAC documentation built on Feb. 18, 2021, 9:06 a.m.
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Description Usage Arguments Value
Description
Creates network alignments using network constructed from subpopulations after PAC
Usage
1 | MAN(sampleIDs, num_PACSupop, smallSubpopCutoff, k_clades)
|
Arguments
sampleIDs |
sampleID vector |
num_PACSupop |
number of subpopulations learned in PAC step for each sample |
smallSubpopCutoff |
Population size cutoff for subpopulations in clade calculation. The small subpopulations will be considered in the refinement step. |
k_clades |
number of clades to output before refinement |
Value
clades_network_only the clades constructed without small subpopulations (by cutoff) using mutual information network alignments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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