PTXQC: Quality Report Generation for MaxQuant and mzTab Results

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.

Package details

AuthorChris Bielow [aut, cre], Juliane Schmachtenberg [ctb], Swenja Wagner [ctb], Patricia Scheil [ctb], Tom Waschischek [ctb], Guido Mastrobuoni [dtc, rev]
MaintainerChris Bielow <chris.bielow@bsc.fu-berlin.de>
LicenseBSD_3_clause + file LICENSE
Version1.0.4
URL https://github.com/cbielow/PTXQC
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("PTXQC")

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PTXQC documentation built on March 31, 2020, 5:19 p.m.