API for PTXQC
Quality Report Generation for MaxQuant Results

Global functions
CV Man page Source code
LCS Man page Source code
LCSn Man page Source code
MQDataReader$getInvalidLines Man page
MQDataReader$getShortNames Man page
MQDataReader$new Man page
MQDataReader$plotNameMapping Man page
MQDataReader$readMQ Man page
MQDataReader$readMappingFile Man page
MQDataReader$substitute Man page
MQDataReader$writeMappingFile Man page
RSD Man page Source code
RTalignmentTree Man page Source code
ScoreInAlignWindow Man page Source code
YAMLClass Man page
YAMLClass-class Man page
\%+\% Man page
addGGtitle Man page Source code
alignmentCheck Man page Source code
appendEnv Man page Source code
assignBlocks Man page Source code
boxplotCompare Man page Source code
brewer.pal.Safe Man page Source code
byX Man page Source code
byXflex Man page Source code
computeMatchRTFractions Man page Source code
correctSetSize Man page Source code
createReport Man page Source code
del0 Man page Source code
delLCP Man page Source code
delLCS Man page Source code
findAlignReference Man page Source code
fixCalibration Man page Source code
flattenList Man page Source code
getAbundanceClass Man page Source code
getECDF Man page Source code
getFragmentErrors Man page Source code
getHTMLTable Man page Source code
getInvalidLines Source code
getMQPARValue Man page Source code
getMappingCreation Source code
getMaxima Man page Source code
getMetaData Man page Source code
getPCA Man page Source code
getPeptideCounts Man page Source code
getProteinCounts Man page Source code
getQCHeatMap Man page Source code
getReportFilenames Man page Source code
getShortNames Source code
ggAxisLabels Man page Source code
ggText Man page Source code
grepv Man page Source code
idTransferCheck Man page Source code
inMatchWindow Man page Source code
lcpCount Man page Source code
lcsCount Man page Source code
longestCommonPrefix Man page Source code
longestCommonSuffix Man page Source code
mosaicize Man page Source code
new Source code
onAttach Source code
pasten Man page Source code
pastet Man page Source code
peakSegmentation Man page Source code
peakWidthOverTime Man page Source code
plotNameMapping Source code
plotTable Man page Source code
plotTableRaw Man page Source code
plot_CalibratedMSErr Man page Source code
plot_Charge Man page Source code
plot_ContEVD Man page Source code
plot_ContUser Man page Source code
plot_ContUserScore Man page Source code
plot_ContsPG Man page Source code
plot_CountData Man page Source code
plot_IDRate Man page Source code
plot_IDsOverRT Man page Source code
plot_IonInjectionTimeOverRT Man page Source code
plot_MBRAlign Man page Source code
plot_MBRIDtransfer Man page Source code
plot_MBRgain Man page Source code
plot_MS2Decal Man page Source code
plot_MS2Oversampling Man page Source code
plot_MissedCleavages Man page Source code
plot_RTPeakWidth Man page Source code
plot_RatiosPG Man page Source code
plot_ScanIDRate Man page Source code
plot_TopN Man page Source code
plot_TopNoverRT Man page Source code
plot_UncalibratedMSErr Man page Source code
pointsPutX Man page Source code
print.PTXQC_table Man page Source code
printWithFooter Man page Source code
qcMetric Man page
qcMetric-class Man page
qcMetric_MSMSScans_TopNoverRT Man page
qcMetric_MSMSScans_TopNoverRT-class Man page
qualBestKS Man page Source code
qualCentered Man page Source code
qualCenteredRef Man page Source code
qualGaussDev Man page Source code
qualHighest Man page Source code
qualLinThresh Man page Source code
qualMedianDist Man page Source code
qualUniform Man page Source code
read.MQ Man page Source code
readMQ Source code
readMappingFile Source code
renameFile Man page Source code
repEach Man page Source code
scale_x_discrete_reverse Man page Source code
scale_y_discrete_reverse Man page Source code
shortenStrings Man page Source code
simplifyNames Man page Source code
substitute Source code
supCount Man page Source code
theme_blank Man page Source code
thinOut Man page Source code
thinOutBatch Man page Source code
wait_for_writable Man page Source code
writeMappingFile Source code
PTXQC documentation built on Nov. 17, 2017, 4:26 a.m.