plot_MBRgain: Plot MaxQuant Match-between-runs id transfer performance.
In PTXQC: Quality Report Generation for MaxQuant and mzTab Results

plot_MBRgain

R Documentation

Plot MaxQuant Match-between-runs id transfer performance.

Description

The plots shows the different categories of peak classes

Usage

plot_MBRgain(data, title_sub = "")

Arguments

`data`	A data.frame with columns as described above
`title_sub`	Subtitle text

Details

The input is a data.frame with columns 'fc.raw.file' - raw file name 'single' - fraction of peptides with are represent only once 'multi.inRT' - fraction of peptides with are represent multiple times, but within a certain RT peak width 'multi.outRT' - fraction of peptides with are represent multiple times, with large RT distance 'sample' - raw file where each row represents one peptide sequence.

Value

GGplot object

Examples

 data = data.frame(fc.raw.file = paste("file", letters[1:4]),
                   abs = c(5461, 5312, 3618, 502), 
                   pc = c(34, 32, 22, 2))
 plot_MBRgain(data, "MBR gain: 18%")

PTXQC documentation built on May 29, 2024, 9:26 a.m.