getProteinCounts: Extract the number of protein groups observed per Raw file...

Description Usage Arguments Details Value

Description

Required columns are "protein.group.ids", "fc.raw.file" and "match.time.difference".

Usage

1
getProteinCounts(d_evidence)

Arguments

d_evidence

Data.frame of evidence.txt as read by MQDataReader

Details

If match-between-runs was enabled during the MaxQuant run, the data.frame returned will contain separate values for 'transferred' evidence plus an 'MBRgain' column, which will give the extra MBR evidence in percent.

Value

Data.frame with columns 'fc.raw.file', 'counts', 'category', 'MBRgain'



Search within the PTXQC package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.