getPeptideCounts: Extract the number of peptides observed per Raw file from an...
In PTXQC: Quality Report Generation for MaxQuant and mzTab Results
getPeptideCounts R Documentation
Extract the number of peptides observed per Raw file
from an evidence table.
Description
Required columns are "fc.raw.file", "modified.sequence" and "is.transferred".
Usage
getPeptideCounts(df_evd)
Arguments
df_evd
Data.frame of evidence.txt as read by MQDataReader
Details
If match-between-runs was enabled during the MaxQuant run,
the data.frame returned will contain separate values for 'transferred' evidence
plus an 'MBRgain' column, which will give the extra MBR evidence in percent.
Value
Data.frame with columns 'fc.raw.file', 'counts', 'category', 'MBRgain'
PTXQC documentation built on May 29, 2024, 9:26 a.m.
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| getPeptideCounts | R Documentation |
Extract the number of peptides observed per Raw file from an evidence table.
Description
Required columns are "fc.raw.file", "modified.sequence" and "is.transferred".
Usage
getPeptideCounts(df_evd)
Arguments
df_evd |
Data.frame of evidence.txt as read by MQDataReader |
Details
If match-between-runs was enabled during the MaxQuant run, the data.frame returned will contain separate values for 'transferred' evidence plus an 'MBRgain' column, which will give the extra MBR evidence in percent.
Value
Data.frame with columns 'fc.raw.file', 'counts', 'category', 'MBRgain'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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