assembleMZQC: Collects all 'mzQC' members from each entry in lst_qcMetrics...
In PTXQC: Quality Report Generation for MaxQuant and mzTab Results
assembleMZQC R Documentation
Collects all 'mzQC' members from each entry in lst_qcMetrics and stores them in an overall mzQC object, which can be written to disk (see writeMZQC()) or augmented otherwise
Description
Collects all 'mzQC' members from each entry in lst_qcMetrics and stores them in an overall mzQC object, which can be written to disk (see writeMZQC()) or augmented otherwise
Usage
assembleMZQC(lst_qcMetrics, raw_file_mapping)
Arguments
lst_qcMetrics
A list of qcMetric objects which have their mzQC member populated with "MzQCrunQuality" and/or "MzQCsetQuality" objects
raw_file_mapping
A data.frame with cols 'from', to' and maybe 'best.effort' (if shorting was unsuccessful), as e.g. obtained by a FilenameMapper$raw_file_mapping
Value
An MzQCmzQC object (root object of an mzQC document)
PTXQC documentation built on July 26, 2023, 5:27 p.m.
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| assembleMZQC | R Documentation |
Collects all 'mzQC' members from each entry in lst_qcMetrics and stores them in an overall mzQC object, which can be written to disk (see writeMZQC()) or augmented otherwise
Description
Collects all 'mzQC' members from each entry in lst_qcMetrics and stores them in an overall mzQC object, which can be written to disk (see writeMZQC()) or augmented otherwise
Usage
assembleMZQC(lst_qcMetrics, raw_file_mapping)
Arguments
lst_qcMetrics |
A list of qcMetric objects which have their mzQC member populated with "MzQCrunQuality" and/or "MzQCsetQuality" objects |
raw_file_mapping |
A data.frame with cols 'from', to' and maybe 'best.effort' (if shorting was unsuccessful), as e.g. obtained by a FilenameMapper$raw_file_mapping |
Value
An MzQCmzQC object (root object of an mzQC document)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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