assembleMZQC: Collects all 'mzQC' members from each entry in lst_qcMetrics...

View source: R/mzQC.R

assembleMZQCR Documentation

Collects all 'mzQC' members from each entry in lst_qcMetrics and stores them in an overall mzQC object, which can be written to disk (see writeMZQC()) or augmented otherwise

Description

Collects all 'mzQC' members from each entry in lst_qcMetrics and stores them in an overall mzQC object, which can be written to disk (see writeMZQC()) or augmented otherwise

Usage

assembleMZQC(lst_qcMetrics, raw_file_mapping)

Arguments

lst_qcMetrics

A list of qcMetric objects which have their mzQC member populated with "MzQCrunQuality" and/or "MzQCsetQuality" objects

raw_file_mapping

A data.frame with cols 'from', to' and maybe 'best.effort' (if shorting was unsuccessful), as e.g. obtained by a FilenameMapper$raw_file_mapping

Value

An MzQCmzQC object (root object of an mzQC document)


PTXQC documentation built on Sept. 21, 2022, 9:10 a.m.