getMetaFilenames: Parses the given mqpar.xml file (or, if not found, tries the...

In PTXQC: Quality Report Generation for MaxQuant and mzTab Results

Parses the given mqpar.xml file (or, if not found, tries the 'txt_folder' + '/../../' folder (i.e. where the raw data should be)) to extract the full filepaths for all Raw files

Description

Parses the given mqpar.xml file (or, if not found, tries the 'txt_folder' + '/../../' folder (i.e. where the raw data should be)) to extract the full filepaths for all Raw files

Usage

getMetaFilenames(mqpar_file, txt_folder)

Arguments

mqpar_file	Location of the mqpar.xml (can be empty, if unknown)
txt_folder	Fallback option: path to the txt folder (which contains evidence.txt, etc)

Value

May return 'NULL' if no mqpar.xml could be found. Otherwise: data.frame with columns:

• 'file' (no path), 'path' (full path incl. names)

• 'file_no_suffix' (as 'file' but without suffix)

• 'CV' (CV term for filetype, e.g. for Thermo Raw)

PTXQC documentation built on April 3, 2025, 9:28 p.m.