API for Platypus
Single-Cell Immune Repertoire and Gene Expression Analysis
| Global functions | |
|---|---|
| GEX_DEgenes | Man page Source code |
| GEX_GSEA | Man page Source code |
| GEX_cluster_genes | Man page Source code |
| GEX_cluster_genes_heatmap | Man page Source code |
| GEX_cluster_membership | Man page Source code |
| GEX_coexpression_coefficient | Man page Source code |
| GEX_dottile_plot | Man page Source code |
| GEX_gene_visualization | Man page Source code |
| GEX_heatmap | Man page Source code |
| GEX_lineage_trajectories | Man page Source code |
| GEX_pairwise_DEGs | Man page Source code |
| GEX_phenotype | Man page Source code |
| GEX_phenotype_per_clone | Man page Source code |
| GEX_proportions_barplot | Man page Source code |
| GEX_scatter_coexpression | Man page Source code |
| GEX_volcano | Man page Source code |
| PlatypusDB_AIRR_to_VGM | Man page Source code |
| PlatypusDB_VGM_to_AIRR | Man page Source code |
| PlatypusDB_load_from_disk | Man page Source code |
| VDJ_GEX_clonotype_clusters_circos | Man page Source code |
| VDJ_GEX_matrix | Man page Source code |
| VDJ_GEX_overlay_clones | Man page Source code |
| VDJ_GEX_stats | Man page Source code |
| VDJ_VJ_usage_circos | Man page Source code |
| VDJ_Vgene_usage | Man page Source code |
| VDJ_Vgene_usage_barplot | Man page Source code |
| VDJ_Vgene_usage_stacked_barplot | Man page Source code |
| VDJ_abundances | Man page Source code |
| VDJ_alpha_beta_Vgene_circos | Man page Source code |
| VDJ_antigen_integrate | Man page Source code |
| VDJ_assemble_for_PnP | Man page Source code |
| VDJ_build | Man page Source code |
| VDJ_call_enclone | Man page Source code |
| VDJ_circos | Man page Source code |
| VDJ_clonal_barplot | Man page Source code |
| VDJ_clonal_donut | Man page Source code |
| VDJ_clonal_expansion | Man page Source code |
| VDJ_clonotype | Man page Source code |
| VDJ_clonotype_v3_w_enclone | Man page Source code |
| VDJ_contigs_to_vgm | Man page Source code |
| VDJ_db_annotate | Man page Source code |
| VDJ_db_load | Man page Source code |
| VDJ_diversity | Man page Source code |
| VDJ_dynamics | Man page Source code |
| VDJ_expand_aberrants | Man page Source code |
| VDJ_extract_germline_consensus_ref | Man page Source code |
| VDJ_germline | Man page Source code |
| VDJ_get_public | Man page Source code |
| VDJ_kmers | Man page Source code |
| VDJ_logoplot_vector | Man page Source code |
| VDJ_network | Man page Source code |
| VDJ_ordination | Man page Source code |
| VDJ_overlap_heatmap | Man page Source code |
| VDJ_phylogenetic_trees | Man page Source code |
| VDJ_phylogenetic_trees_plot | Man page Source code |
| VDJ_plot_SHM | Man page Source code |
| VDJ_public | Man page Source code |
| VDJ_rarefaction | Man page Source code |
| VDJ_variants_per_clone | Man page Source code |
| VGM_build | Man page Source code |
| VGM_expand_featurebarcodes | Man page Source code |
| VGM_expanded_clones | Man page Source code |
| VGM_integrate | Man page Source code |
| small_vdj | Man page |
| small_vgm | Man page |
