API for RAM
R for Amplicon-Sequencing-Based Microbial-Ecology
| Global functions | |
|---|---|
| ITS1 | Man page |
| ITS1/ITS2 | Man page |
| ITS2 | Man page |
| LCA.OTU | Man page |
| META.clust | Man page |
| OTU.cca | Man page |
| OTU.diversity | Man page |
| OTU.ord | Man page |
| OTU.rarefy | Man page |
| OTU.rda | Man page |
| OTU.recap | Man page |
| RAM | Man page |
| RAM-package | Man page |
| RAM.border | Man page |
| RAM.color | Man page |
| RAM.dates | Man page |
| RAM.factors | Man page |
| RAM.input.formatting | Man page |
| RAM.pal | Man page |
| RAM.plotting | Man page |
| RAM.rank.formatting | Man page |
| Taxa.cca | Man page |
| Taxa.ord | Man page |
| Taxa.rda | Man page |
| alignment | Man page |
| assist.NB | Man page |
| assist.ado | Man page |
| assist.cca | Man page |
| assist.ordination | Man page |
| assist.rda | Man page |
| col.splitup | Man page |
| combine.OTU | Man page |
| core.OTU | Man page |
| core.OTU.rank | Man page |
| core.Taxa | Man page |
| correlation | Man page |
| data.clust | Man page |
| data.revamp | Man page |
| data.subset | Man page |
| dissim | Man page |
| dissim.GOF | Man page |
| dissim.GOF.plot | Man page |
| dissim.alleig.plot | Man page |
| dissim.clust | Man page |
| dissim.clust.plot | Man page |
| dissim.eig | Man page |
| dissim.eig.plot | Man page |
| dissim.heatmap | Man page |
| dissim.ord | Man page |
| dissim.ord.plot | Man page |
| dissim.plot | Man page |
| dissim.pvar | Man page |
| dissim.pvar.plot | Man page |
| dissim.tree | Man page |
| dissim.tree.plot | Man page |
| diversity.indices | Man page |
| envis.NB | Man page |
| evenness | Man page |
| factor.abundance | Man page |
| filter.META | Man page |
| filter.OTU | Man page |
| filter.Taxa | Man page |
| fread.OTU | Man page |
| fread.meta | Man page |
| get.rank | Man page |
| group.OTU | Man page |
| group.Taxa.bar | Man page |
| group.Taxa.box | Man page |
| group.abund.Taxa | Man page |
| group.abundance | Man page |
| group.abundance.meta | Man page |
| group.diversity | Man page |
| group.heatmap | Man page |
| group.heatmap.simple | Man page |
| group.indicators | Man page |
| group.rich | Man page |
| group.spatial | Man page |
| group.spec | Man page |
| group.temporal | Man page |
| group.top.number | Man page |
| group.top.percent | Man page |
| group.venn | Man page |
| location.formatting | Man page |
| match.data | Man page |
| meta | Man page |
| network_data | Man page |
| pcoa.plot | Man page |
| percent.classified | Man page |
| phylo_taxonomy | Man page |
| phylog_taxonomy | Man page |
| read.OTU | Man page |
| read.meta | Man page |
| reformat.taxonomy | Man page |
| reset.META | Man page |
| sample.locations | Man page |
| sample.map | Man page |
| sample.sites | Man page |
| seq_var | Man page |
| shared.OTU | Man page |
| shared.Taxa | Man page |
| tax.abund | Man page |
| tax.fill | Man page |
| tax.split | Man page |
| top.groups.plot | Man page |
| transpose.LCA | Man page |
| transpose.OTU | Man page |
| true.diversity | Man page |
| valid.OTU | Man page |
| valid.taxonomy | Man page |
| write.data | Man page |
