get_characters_list: Extract the character matrix
In RNeXML: Semantically Rich I/O for the 'NeXML' Format
get_characters_list R Documentation
Extract the character matrix
Description
Extract the character matrix
Usage
get_characters_list(nexml, rownames_as_col = FALSE)
Arguments
nexml
nexml object (e.g. from read.nexml)
rownames_as_col
option to return character matrix rownames
(with taxon ids) as it's own column in the data.frame. Default is FALSE
for compatibility with geiger and similar packages.
Value
the list of taxa
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_characters_list(nex)
RNeXML documentation built on Feb. 16, 2023, 6:56 p.m.
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| get_characters_list | R Documentation |
Extract the character matrix
Description
Extract the character matrix
Usage
get_characters_list(nexml, rownames_as_col = FALSE)
Arguments
nexml |
nexml object (e.g. from read.nexml) |
rownames_as_col |
option to return character matrix rownames (with taxon ids) as it's own column in the data.frame. Default is FALSE for compatibility with geiger and similar packages. |
Value
the list of taxa
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_characters_list(nex)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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