nexml_write | R Documentation |
Write nexml files
nexml_write( x = nexml(), file = NULL, trees = NULL, characters = NULL, meta = NULL, ... )
x |
a nexml object, or any phylogeny object (e.g. phylo, phylo4) that can be coerced into one. Can also be omitted, in which case a new nexml object will be constructed with the additional parameters specified. |
file |
the name of the file to write out |
trees |
phylogenetic trees to add to the nexml file (if not already given in x)
see |
characters |
additional characters |
meta |
A meta element or list of meta elements, see |
... |
additional arguments to add__basic_meta, such as the title. See |
Writes out a nexml file
add_trees
add_characters
add_meta
nexml_read
## Write an ape tree to nexml, analgous to write.nexus: library(ape); data(bird.orders) ex <- tempfile(fileext=".xml") write.nexml(bird.orders, file=ex)
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