get_trees: extract a phylogenetic tree from the nexml
In RNeXML: Semantically Rich I/O for the 'NeXML' Format
get_trees R Documentation
extract a phylogenetic tree from the nexml
Description
extract a phylogenetic tree from the nexml
Usage
get_trees(nexml)
Arguments
nexml
a representation of the nexml object from
which the data is to be retrieved
Value
an ape::phylo tree, if only one tree is represented.
Otherwise returns a list of lists of multiphylo trees.
To consistently receive the list of lists format (preserving
the hierarchical nature of the nexml), use get_trees_list instead.
See Also
get_trees get_flat_trees get_item
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_trees(nex)
RNeXML documentation built on Feb. 16, 2023, 6:56 p.m.
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| get_trees | R Documentation |
extract a phylogenetic tree from the nexml
Description
extract a phylogenetic tree from the nexml
Usage
get_trees(nexml)
Arguments
nexml |
a representation of the nexml object from which the data is to be retrieved |
Value
an ape::phylo tree, if only one tree is represented.
Otherwise returns a list of lists of multiphylo trees.
To consistently receive the list of lists format (preserving
the hierarchical nature of the nexml), use get_trees_list instead.
See Also
get_trees get_flat_trees get_item
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_trees(nex)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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