get_flat_trees: get_flat_trees
In RNeXML: Semantically Rich I/O for the 'NeXML' Format
get_flat_trees R Documentation
get_flat_trees
Description
extract a single multiPhylo object containing all trees in the nexml
Usage
get_flat_trees(nexml)
Arguments
nexml
a representation of the nexml object from which the data is to be retrieved
Details
Note that this method collapses any hierarchical structure that may have been present as multiple trees nodes in the original nexml (though such a feature is rarely used). To preserve that structure, use get_trees instead.
Value
a multiPhylo object (list of ape::phylo objects). See details.
See Also
get_trees get_trees get_item
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_flat_trees(nex)
RNeXML documentation built on Feb. 16, 2023, 6:56 p.m.
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| get_flat_trees | R Documentation |
get_flat_trees
Description
extract a single multiPhylo object containing all trees in the nexml
Usage
get_flat_trees(nexml)
Arguments
nexml |
a representation of the nexml object from which the data is to be retrieved |
Details
Note that this method collapses any hierarchical structure that may have been present as multiple trees nodes in the original nexml (though such a feature is rarely used). To preserve that structure, use get_trees instead.
Value
a multiPhylo object (list of ape::phylo objects). See details.
See Also
get_trees get_trees get_item
Examples
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_flat_trees(nex)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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