Man pages for RNeXML
Semantically Rich I/O for the 'NeXML' Format

add_basic_metaAdd basic metadata
add_charactersAdd character data to a nexml object
add_metaAdd metadata to a nexml file
add_namespacesadd namespaces
add_treesadd_trees
c-ListOfmeta-methodConcatenate ListOfmeta elements into a ListOfmeta
c-meta-methodConcatenate meta elements into a ListOfmeta
c-nexml-methodConcatenate nexml files
flatten_multiphyloFlatten a multiphylo object
get_charactersGet character data.frame from nexml
get_characters_listExtract the character matrix
get_citationget_citation
get_flat_treesget_flat_trees
get_levelget_level
get_licenseget_license
get_metadataget_metadata
get_namespacesget namespaces
get_rdfExtract rdf-xml from a NeXML file
get_taxaget_taxa
get_taxa_listget_taxa_list
get_taxa_metaget_taxa_meta
get_taxa_meta_listget_taxa_meta_list
get_treesextract a phylogenetic tree from the nexml
get_trees_listextract all phylogenetic trees in ape format
metaConstructor function for metadata nodes
nexml_addadd elements to a new or existing nexml object
nexml_figsharepublish nexml to figshare
nexml_getGet the desired element from the nexml object
nexml_publishpublish nexml files to the web and receive a DOI
nexml_readRead NeXML files into various R formats
nexml_to_simmapnexml_to_simmap
nexml_validatevalidate nexml using the online validator tool
nexml_writeWrite nexml files
reset_id_counterreset id counter
simmap_exA nexml class R object that includes simmap annotations
simmap_to_nexmlsimmap_to_nexml
taxize_nexmltaxize nexml
toPhylonexml to phylo
RNeXML documentation built on May 7, 2018, 9:04 a.m.