taxize_nexml | R Documentation |
Check taxonomic names against the specified service and add appropriate semantic metadata to the nexml OTU unit containing the corresponding identifier.
taxize_nexml( nexml, type = c("ncbi", "itis", "col", "tpl", "gbif", "wd"), warnings = TRUE, ... )
nexml |
a nexml object |
type |
the name of the identifier to use |
warnings |
should we show warning messages if no match can be found? |
... |
additional arguments to |
## Not run: data(bird.orders) birds <- add_trees(bird.orders) birds <- taxize_nexml(birds, "NCBI") ## End(Not run)
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