API for RNeXML
Semantically Rich I/O for the 'NeXML' Format

Global functions
add_basic_meta Man page Source code
add_char Source code
add_character_nodes Source code
add_characters Man page Source code
add_meta Man page Source code
add_namespaces Man page Source code
add_otu Source code
add_rows Source code
add_states Source code
add_trees Man page Source code
add_trees_block Source code
attributes_to_row Source code
c,ListOfmeta-method Man page
c,meta-method Man page
c,nexml-method Man page
character_to_label Source code
characters_to_simmap Source code
closure Source code
extract_character_matrix Source code
flatten_multiphylo Man page Source code
format_characters Source code
fromPhylo Source code
get_by_id Source code
get_char_maps Source code
get_characters Man page Source code
get_characters_list Man page Source code
get_citation Man page Source code
get_flat_trees Man page Source code
get_ids Source code
get_item Man page
get_level Man page Source code
get_license Man page Source code
get_metadata Man page Source code
get_namespaces Man page Source code
get_otu Man page
get_otu_maps Source code
get_otus_list Man page
get_rdf Man page Source code
get_state_maps Source code
get_taxa Man page Source code
get_taxa_list Man page Source code
get_taxa_meta Man page Source code
get_taxa_meta_list Man page Source code
get_trees Man page Source code
get_trees_list Man page Source code
isEmpty Source code
map_chars_to_label Source code
map_state_to_symbol Source code
map_states_to_symbols Source code
meta Man page Source code
meta_recursion Source code
missing_as_na Source code
na_symbol_to_state Source code
name_by_id Source code
name_by_id_or_label Source code
new_otus_block Source code
nexmlTree Source code
nexml_add Man page Source code
nexml_citation Source code
nexml_figshare Man page Source code
nexml_get Man page Source code
nexml_id Source code
nexml_publish Man page Source code
nexml_read Man page Source code
nexml_read.XMLInternalDocument Man page Source code
nexml_read.XMLInternalNode Man page Source code
nexml_read.character Man page Source code
nexml_schema_validate Source code
nexml_to_simmap Man page Source code
nexml_validate Man page Source code
nexml_write Man page Source code
node_id Source code
nodelist_to_df Source code
optional_labels Source code
otu_list Source code
otu_to_label Source code
read.nexml Man page
recursion Source code
reset_id_counter Man page Source code
reverse_map Source code
setxpath Source code
simmap_edge_annotations Source code
simmap_ex Man page
simmap_to_nexml Man page Source code
split_by_class Source code
standardize_phylo_list Source code
state_to_symbol Source code
taxize_nexml Man page Source code
toPhylo Man page Source code
tree_to_simmap Source code
unique_ids Source code
write.nexml Man page
RNeXML documentation built on Aug. 13, 2018, 5:04 p.m.