Files in RNeXML
Semantically Rich I/O for the 'NeXML' Format
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/internal_get_node_maps.R
R/internal_nexml_id.R
R/constructors.R
R/meta.R
R/get_metadata.R
R/nexml_get.R
R/get_taxa.R
R/prefixed-uris.R
R/add_characters.R
R/get_taxa_meta.R
R/classes.R
R/tbl_df.R
R/nexml_publish.R
R/internal_name_by_id.R
R/deprecated.R
R/internal_isEmpty.R
R/get_basic_metadata.R
R/add_meta.R
R/get_rdf.R
R/nexml_read.R
R/concatenate_nexml.R
R/get_trees.R
R/add_basic_meta.R
R/get_characters.R
R/taxize_nexml.R
R/character_classes.R
R/nexml_validate.R
R/nexmlTree.R
R/S4-utils.R
R/nexml_methods.R
R/simmap.R
R/nexml_write.R
R/get_level.R
R/nexml_add.R
R/get_namespaces.R
R/add_trees.R
R/utils.R
R/add_namespaces.R
inst/simmap.md
inst/CITATION
inst/WORDLIST
inst/doc/sparql.html
inst/doc/simmap.Rmd
inst/doc/sparql.Rmd
inst/doc/metadata.html
inst/doc/intro.Rmd
inst/doc/intro.html
inst/doc/S4.Rmd
inst/doc/simmap.html
inst/doc/metadata.Rmd
inst/doc/S4.html
inst/examples/coal.xml
inst/examples/comp_analysis.xml
inst/examples/phenex.xml
inst/examples/geospiza.xml
inst/examples/primates_meta.xml
inst/examples/some_missing_branchlengths.xml
inst/examples/merge_data.Rmd
inst/examples/missing_some_branchlengths.xml
inst/examples/primates.xml
inst/examples/taxa.xml
inst/examples/no-base-ns.xml
inst/examples/gardiner_1984.xml
inst/examples/treebase-record.xml
inst/examples/mbank_X962_11-22-2013_1534.nex
inst/examples/characters.xml
inst/examples/meta_taxa.xml
inst/examples/simmap_ex.xml
inst/examples/sparql.newick
inst/examples/merge_data.md
inst/examples/trees.xml
inst/examples/ontotrace-result.xml
inst/examples/meta_example.xml
inst/examples/simmap.nex
inst/examples/ncbii.xml
inst/examples/primates_from_R.xml
inst/examples/simmap.xml
inst/examples/RDFa2RDFXML.xsl
inst/examples/multitrees.xml
inst/examples/phenoscape.xml
inst/examples/biophylo.xml
inst/examples/jsonld-ex.R
inst/examples/primates_meta_xslt.xml
inst/xsd/nexml.xsd
inst/xsd/LICENSE
inst/xsd/README.txt
inst/xsd/abstract.xsd
inst/xsd/taxa/taxa.xsd
inst/xsd/taxa/README.txt
inst/xsd/meta/annotations.xsd
inst/xsd/meta/sets.xsd
inst/xsd/meta/README.txt
inst/xsd/external/xlink.xsd
inst/xsd/external/sawsdl.xsd
inst/xsd/external/xml.xsd
inst/xsd/external/xhtml-datatypes-1.xsd
inst/xsd/trees/tree.xsd
inst/xsd/trees/network.xsd
inst/xsd/trees/trees.xsd
inst/xsd/trees/abstracttrees.xsd
inst/xsd/trees/README.txt
inst/xsd/characters/restriction.xsd
inst/xsd/characters/standard.xsd
inst/xsd/characters/protein.xsd
inst/xsd/characters/continuous.xsd
inst/xsd/characters/characters.xsd
inst/xsd/characters/dna.xsd
inst/xsd/characters/abstractcharacters.xsd
inst/xsd/characters/rna.xsd
inst/xsd/characters/README.txt
build/vignette.rds
tests/test-all.R
tests/spelling.R
tests/testthat/test_01_exported_util.R
tests/testthat/test_characters.R
tests/testthat/test_nexml_read.R
tests/testthat/test_get_characters.R
tests/testthat/geiger_test.R
tests/testthat/treebase_test.R
tests/testthat/test_zzz_cleanup.R
tests/testthat/test_inheritance.R
tests/testthat/test_toplevel_api.R
tests/testthat/test_02_summary.R
tests/testthat/test_taxonomy.R
tests/testthat/test_parsing.R
tests/testthat/test_global_ids.R
tests/testthat/test_meta.R
tests/testthat/test_ape.R
tests/testthat/test_publish.R
tests/testthat/conversions.R
tests/testthat/test_rdf.R
tests/testthat/test_simmap.R
tests/testthat/test_concatenate.R
tests/testthat/test_get_level.R
tests/testthat/test_serializing.R
tests/testthat/helper-RNeXML.R
tests/testthat/test_meta_extract.R
tests/testthat/test_01_utils.R
tests/testthat/test_comp_analysis.R
tests/testthat/test_validate.R
vignettes/simmap.Rmd
vignettes/sparql.Rmd
vignettes/intro-unnamed-chunk-5-1.png
vignettes/metadata.Rmd.orig
vignettes/intro.Rmd
vignettes/references.bib
vignettes/S4.Rmd
vignettes/simmap-Figure1-1.png
vignettes/simmap.Rmd.orig
vignettes/sparql.Rmd.orig
vignettes/metadata.Rmd
vignettes/sparql-unnamed-chunk-8-1.png
vignettes/S4.Rmd.orig
vignettes/intro.Rmd.orig
tools/README-unnamed-chunk-5-1.png
man/c-meta.Rd
man/dot-methodWithNext.Rd
man/get_level.Rd
man/get_citation.Rd
man/flatten_multiphylo.Rd
man/add_trees.Rd
man/Annotated-class.Rd
man/nexml_get.Rd
man/get_taxa.Rd
man/add_namespaces.Rd
man/get_metadata.Rd
man/dot-callGeneric.Rd
man/slot-ResourceMeta-method.Rd
man/add_basic_meta.Rd
man/findNextMethod.Rd
man/taxize_nexml.Rd
man/lcapply.Rd
man/get_taxa_list.Rd
man/nexml_write.Rd
man/nexml-class.Rd
man/meta.Rd
man/get_namespaces.Rd
man/get_taxa_meta.Rd
man/get_metadata_values.Rd
man/get_flat_trees.Rd
man/get_taxa_meta_list.Rd
man/get_characters_list.Rd
man/get_characters.Rd
man/expand_prefix.Rd
man/simmap_to_nexml.Rd
man/add_meta.Rd
man/summary-nexml-method.Rd
man/get_trees.Rd
man/add_characters.Rd
man/charzero_as_empty.Rd
man/New.Rd
man/dot-sigLabel.Rd
man/nexml_figshare.Rd
man/c-nexml-method.Rd
man/reset_id_counter.Rd
man/constructors.Rd
man/nexml_validate.Rd
man/nexml_add.Rd
man/nexml_read.Rd
man/get_license.Rd
man/nexml_publish.Rd
man/coalesce_.Rd
man/get_all_meta.Rd
man/get_trees_list.Rd
man/get_rdf.Rd
man/get_meta.Rd
man/toPhylo.Rd
man/figures/unnamed-chunk-8-1.png
man/figures/Figure1-1.png
man/figures/unnamed-chunk-5-1.png
man/figures/logo.svg
