nexml_validate: validate nexml using the online validator tool

In RNeXML: Semantically Rich I/O for the 'NeXML' Format

validate nexml using the online validator tool

Description

validate nexml using the online validator tool

Usage

nexml_validate(
  file,
  schema = system.file("xsd/nexml.xsd", package = "RNeXML"),
  local = TRUE
)

Arguments

file	path to the nexml file to validate
schema	URL of schema (for fallback method only, set by default).
local	logical, if TRUE we skip the online validator and rely only on pure XML-schema validation. This may fail to detect invalid use of some semantic elements.

Details

Requires an internet connection if local=FALSE. see http://www.nexml.org/nexml/phylows/validator for more information in debugging invalid files

Value

TRUE if the file is valid, FALSE or error message otherwise

Examples

## Not run: 
data(bird.orders)
birds <- nexml_write(bird.orders, "birds_orders.xml")
nexml_validate("birds_orders.xml")
unlink("birds_orders.xml") # delete file to clean up

## End(Not run)

RNeXML documentation built on Feb. 16, 2023, 6:56 p.m.