get_trees_list | R Documentation |
extract all phylogenetic trees in ape format
get_trees_list(nexml)
nexml |
a representation of the nexml object from which the data is to be retrieved |
returns a list of lists of multiphylo trees, even if all trees
are in the same trees
node (and hence the outer list will be of length
or if there is only a single tree (and hence the inner list will also be of length 1. This ensures a consistent return type regardless of the number of trees present in the nexml file, and also preserves any grouping of trees.
get_trees
get_flat_trees
get_item
comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML") nex <- nexml_read(comp_analysis) get_trees_list(nex)
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