CellScatter: Cell-cell scatter plot

Description Usage Arguments Value Examples

View source: R/visualization.R

Description

Creates a plot of scatter plot of features across two single cells. Pearson correlation between the two cells is displayed above the plot.

Usage

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CellScatter(
  object,
  cell1,
  cell2,
  features = NULL,
  highlight = NULL,
  cols = NULL,
  pt.size = 1,
  smooth = FALSE,
  raster = NULL
)

Arguments

object

Seurat object

cell1

Cell 1 name

cell2

Cell 2 name

features

Features to plot (default, all features)

highlight

Features to highlight

cols

Colors to use for identity class plotting.

pt.size

Size of the points on the plot

smooth

Smooth the graph (similar to smoothScatter)

raster

Convert points to raster format, default is NULL which automatically rasterizes if plotting more than 50,000 cells

Value

A ggplot object

Examples

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CellScatter(object = pbmc_small, cell1 = 'ATAGGAGAAACAGA', cell2 = 'CATCAGGATGCACA')

Seurat documentation built on Jan. 13, 2021, 7:11 p.m.