Seurat-package: Seurat package

Description Details Package options


Tools for single-cell genomics


Tools for single-cell genomics

Package options

Seurat uses the following [options()] to configure behaviour:


global option to call gc() after many operations. This can be helpful in cleaning up the memory status of the R session and prevent use of swap space. However, it does add to the computational overhead and setting to FALSE can speed things up if you're working in an environment where RAM availability is not a concern.


Show warning about the default backend for RunUMAP changing from Python UMAP via reticulate to UWOT


For functions that have ... as a parameter, this controls the behavior when an item isn't used. Can be one of warn, stop, or silent.


Show message about more efficient Wilcoxon Rank Sum test available via the limma package


Show message about more efficient Moran's I function available via the Rfast2 package


Show message about changes to default behavior of split/multi violin plots


Show package startup messages in interactive sessions

Seurat documentation built on Jan. 13, 2021, 7:11 p.m.