DietSeurat: Slim down a Seurat object

In Seurat: Tools for Single Cell Genomics

Slim down a Seurat object

Description

Keep only certain aspects of the Seurat object. Can be useful in functions that utilize merge as it reduces the amount of data in the merge

Usage

DietSeurat(
  object,
  layers = NULL,
  features = NULL,
  assays = NULL,
  dimreducs = NULL,
  graphs = NULL,
  misc = TRUE,
  counts = deprecated(),
  data = deprecated(),
  scale.data = deprecated(),
  ...
)

Arguments

object	A Seurat object
layers	A vector or named list of layers to keep
features	Only keep a subset of features, defaults to all features
assays	Only keep a subset of assays specified here
dimreducs	Only keep a subset of DimReducs specified here (if NULL, remove all DimReducs)
graphs	Only keep a subset of Graphs specified here (if NULL, remove all Graphs)
misc	Preserve the misc slot; default is TRUE
counts	Preserve the count matrices for the assays specified
data	Preserve the data matrices for the assays specified
scale.data	Preserve the scale data matrices for the assays specified
...	Ignored

Value

object with only the sub-object specified retained

Seurat documentation built on May 29, 2024, 4:20 a.m.