View source: R/visualization.R
AnnotationPlot | R Documentation |
Display gene annotations in a given region of the genome.
AnnotationPlot( object, region, assay = NULL, mode = "gene", sep = c("-", "-"), extend.upstream = 0, extend.downstream = 0 )
object |
A |
region |
A genomic region to plot |
assay |
Name of assay to use. If NULL, use the default assay. |
mode |
Display mode. Choose either "gene" or "transcript" to determine whether genes or transcripts are plotted. |
sep |
Separators to use for strings encoding genomic coordinates. First element is used to separate the chromosome from the coordinates, second element is used to separate the start from end coordinate. |
extend.upstream |
Number of bases to extend the region upstream. |
extend.downstream |
Number of bases to extend the region downstream. |
Returns a ggplot
object
AnnotationPlot(object = atac_small, region = c("chr1-29554-39554"))
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