DensityScatter: Scatterplot colored by point density

In Signac: Analysis of Single-Cell Chromatin Data

Scatterplot colored by point density

Description

Create a scatterplot using variables in the object metadata and color cells by the density of points in the x-y space.

Usage

DensityScatter(object, x, y, log_x = FALSE, log_y = FALSE, quantiles = NULL)

Arguments

object	A Seurat object
x	Name of metadata variable to plot on x axis
y	Name of metadata variable to plot on y axis
log_x	log10 transform x values
log_y	log10 transform y values
quantiles	Vector of quantiles to display for x and y data distribution. Must be integer values between 0 and 100. TRUE can be passed as a shorthand way to set c(5, 10, 90, 95). If FALSE or NULL, no quantile information is displayed

Value

Returns a ggplot object

Signac documentation built on Sept. 11, 2024, 9:30 p.m.