coverage-ChromatinAssay-method: Coverage of a ChromatinAssay object

In Signac: Analysis of Single-Cell Chromatin Data

Coverage of a ChromatinAssay object

Description

This is the coverage method for ChromatinAssay() objects.

Usage

## S4 method for signature 'ChromatinAssay'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

## S4 method for signature 'Seurat'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

Arguments

x	A ChromatinAssay() object
shift	How much each range should be shifted before coverage is computed. See IRanges::coverage() in the IRanges package.
width	Specifies the length of the returned coverage vectors. See IRanges::coverage() in the IRanges package.
weight	Assigns weight to each range in x. See IRanges::coverage() in the IRanges package.
method	See IRanges::coverage() in the IRanges package

Functions

• coverage(ChromatinAssay): method for ChromatinAssay objects

• coverage(Seurat): method for Seurat objects

See Also

• coverage-methods in the IRanges package.

• coverage-methods in the GenomicRanges package

• ChromatinAssay

Signac documentation built on April 1, 2026, 5:06 p.m.