coverage-ChromatinAssay-method: Coverage of a ChromatinAssay object

In Signac: Analysis of Single-Cell Chromatin Data

Coverage of a ChromatinAssay object

Description

This is the coverage method for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

## S4 method for signature 'Seurat'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

Arguments

x	A ChromatinAssay object
shift	How much each range should be shifted before coverage is computed. See coverage in the IRanges package.
width	Specifies the length of the returned coverage vectors. See coverage in the IRanges package.
weight	Assigns weight to each range in x. See coverage in the IRanges package.
method	See coverage in the IRanges package

Functions

• coverage(ChromatinAssay): method for ChromatinAssay objects

• coverage(Seurat): method for Seurat objects

See Also

• coverage-methods in the IRanges package.

• coverage-methods in the GenomicRanges package

• ChromatinAssay-class

Signac documentation built on Sept. 11, 2024, 9:30 p.m.