BinarizeCounts: Binarize counts

In Signac: Analysis of Single-Cell Chromatin Data

Binarize counts

Description

Set counts >1 to 1 in a count matrix

Usage

BinarizeCounts(object, ...)

## Default S3 method:
BinarizeCounts(object, assay = NULL, verbose = TRUE, ...)

## S3 method for class 'Assay'
BinarizeCounts(object, assay = NULL, verbose = TRUE, ...)

## S3 method for class 'Seurat'
BinarizeCounts(object, assay = NULL, verbose = TRUE, ...)

Arguments

object	A Seurat object
...	Arguments passed to other methods
assay	Name of assay to use. Can be a list of assays, and binarization will be applied to each.
verbose	Display messages

Value

Returns a Seurat object

Examples

x <- matrix(data = sample(0:3, size = 25, replace = TRUE), ncol = 5)
BinarizeCounts(x)
BinarizeCounts(atac_small[['peaks']])
BinarizeCounts(atac_small)

Signac documentation built on Sept. 11, 2024, 9:30 p.m.