CoverageBrowser: Genome browser

In Signac: Analysis of Single-Cell Chromatin Data

Genome browser

Description

Interactive version of the CoveragePlot function. Allows altering the genome position interactively. The current view at any time can be saved to a list of ggplot objects using the "Save plot" button, and this list of plots will be returned after ending the browser by pressing the "Done" button.

Usage

CoverageBrowser(object, region, assay = NULL, sep = c("-", "-"), ...)

Arguments

object	A Seurat object
region	A set of genomic coordinates
assay	Name of assay to use
sep	Separators for genomic coordinates if region supplied as a string rather than GRanges object
...	Parameters passed to CoveragePlot

Value

Returns a list of ggplot objects

Signac documentation built on Sept. 11, 2024, 9:30 p.m.