CountsInRegion: Counts in region

In Signac: Analysis of Single-Cell Chromatin Data

Counts in region

Description

Count reads per cell overlapping a given set of regions

Usage

CountsInRegion(object, assay, regions, ...)

Arguments

object	A Seurat object
assay	Name of a chromatin assay in the object to use
regions	A GRanges object
...	Additional arguments passed to findOverlaps

Value

Returns a numeric vector

Examples

CountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)

Signac documentation built on Sept. 11, 2024, 9:30 p.m.