as.ChromatinAssay: Convert objects to a ChromatinAssay

In Signac: Analysis of Single-Cell Chromatin Data

Convert objects to a ChromatinAssay

Description

Convert objects to a ChromatinAssay

Usage

as.ChromatinAssay(x, ...)

## S3 method for class 'Assay'
as.ChromatinAssay(
  x,
  ranges = NULL,
  seqinfo = NULL,
  annotation = NULL,
  motifs = NULL,
  fragments = NULL,
  bias = NULL,
  positionEnrichment = NULL,
  sep = c("-", "-"),
  ...
)

Arguments

x	An object to convert to class ChromatinAssay
...	Arguments passed to other methods
ranges	A GRanges object
seqinfo	A Seqinfo object containing basic information about the genome used. Alternatively, the name of a UCSC genome can be provided and the sequence information will be downloaded from UCSC.
annotation	Genomic annotation
motifs	A Motif object
fragments	A list of Fragment objects
bias	Tn5 integration bias matrix
positionEnrichment	A named list of position enrichment matrices.
sep	Characters used to separate the chromosome, start, and end coordinates in the row names of the data matrix

Signac documentation built on Sept. 11, 2024, 9:30 p.m.