as.ChromatinAssay: Convert objects to a ChromatinAssay

View source: R/generics.R

as.ChromatinAssayR Documentation

Convert objects to a ChromatinAssay

Description

Convert objects to a ChromatinAssay

Usage

as.ChromatinAssay(x, ...)

## S3 method for class 'Assay'
as.ChromatinAssay(
  x,
  ranges = NULL,
  seqinfo = NULL,
  annotation = NULL,
  motifs = NULL,
  fragments = NULL,
  bias = NULL,
  positionEnrichment = NULL,
  sep = c("-", "-"),
  ...
)

Arguments

x

An object to convert to class ChromatinAssay

...

Arguments passed to other methods

ranges

A GRanges object

seqinfo

A Seqinfo object containing basic information about the genome used. Alternatively, the name of a UCSC genome can be provided and the sequence information will be downloaded from UCSC.

annotation

Genomic annotation

motifs

A Motif object

fragments

A list of Fragment objects

bias

Tn5 integration bias matrix

positionEnrichment

A named list of position enrichment matrices.

sep

Characters used to separate the chromosome, start, and end coordinates in the row names of the data matrix


Signac documentation built on Sept. 11, 2024, 9:30 p.m.