DepthCor: Plot sequencing depth correlation

In Signac: Analysis of Single-Cell Chromatin Data

Plot sequencing depth correlation

Description

Compute the correlation between total counts and each reduced dimension component.

Usage

DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

object	A SeuratObject::Seurat() object
assay	Name of assay to use for sequencing depth. If NULL, use the default assay.
reduction	Name of a dimension reduction stored in the input object
n	Number of components to use. If NULL, use all components.
...	Additional arguments passed to stats::cor()

Value

Returns a ggplot2::ggplot() object

Examples

DepthCor(object = atac_small)

Signac documentation built on April 1, 2026, 5:06 p.m.