DepthCor: Plot sequencing depth correlation

In Signac: Analysis of Single-Cell Chromatin Data

Plot sequencing depth correlation

Description

Compute the correlation between total counts and each reduced dimension component.

Usage

DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

object	A Seurat object
assay	Name of assay to use for sequencing depth. If NULL, use the default assay.
reduction	Name of a dimension reduction stored in the input object
n	Number of components to use. If NULL, use all components.
...	Additional arguments passed to cor

Value

Returns a ggplot object

Examples

DepthCor(object = atac_small)

Signac documentation built on Sept. 11, 2024, 9:30 p.m.