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#' @name TransPhylo-package
#' @aliases TransPhylo
#' @docType package
#' @title Inference of Transmission Tree from a Dated Phylogeny
#'
#' @description Inference of transmission tree from a dated phylogeny.
#' Includes methods to simulate and analyse outbreaks.
#'
#' @author Xavier Didelot \email{xavier.didelot@gmail.com}
#'
#' @references Didelot et al. (2014) <doi:10.1093/molbev/msu121>
#' Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
#' @seealso https://github.com/xavierdidelot/TransPhylo
#' @importFrom Rcpp evalCpp
#' @useDynLib TransPhylo
#' @import stats
#' @import graphics
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