R/bicenter.wt.R

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

"bicenter.wt" <- function (X, row.wt = rep(1, nrow(X)), col.wt = rep(1, ncol(X))) {
    X <- as.matrix(X)
    n <- nrow(X)
    p <- ncol(X)
    if (length(row.wt) != n) 
        stop("length of row.wt must equal the number of rows in x")
    if (any(row.wt < 0) || (sr <- sum(row.wt)) == 0) 
        stop("weights must be non-negative and not all zero")
    row.wt <- row.wt/sr
    if (length(col.wt) != p) 
        stop("length of col.wt must equal the number of columns in x")
    if (any(col.wt < 0) || (st <- sum(col.wt)) == 0) 
        stop("weights must be non-negative and not all zero")
    col.wt <- col.wt/st
    row.mean <- apply(row.wt * X, 2, sum)
    col.mean <- apply(col.wt * t(X), 2, sum)
    col.mean <- col.mean - sum(row.mean * col.wt)
    X <- sweep(X, 2, row.mean)
    X <- t(sweep(t(X), 2, col.mean))
    return(X)
}