grepLogs: Grep Log Files for a Pattern

In batchtools: Tools for Computation on Batch Systems

Grep Log Files for a Pattern

Description

Crawls through log files and reports jobs with lines matching the pattern. See showLog for an example.

Usage

grepLogs(
  ids = NULL,
  pattern,
  ignore.case = FALSE,
  fixed = FALSE,
  reg = getDefaultRegistry()
)

Arguments

ids	[data.frame or integer] A data.frame (or data.table) with a column named “job.id”. Alternatively, you may also pass a vector of integerish job ids. If not set, defaults to the return value of findStarted. Invalid ids are ignored.
pattern	[character(1L)] Regular expression or string (see fixed).
ignore.case	[logical(1L)] If TRUE the match will be performed case insensitively.
fixed	[logical(1L)] If FALSE (default), pattern is a regular expression and a fixed string otherwise.
reg	[Registry] Registry. If not explicitly passed, uses the default registry (see setDefaultRegistry).

Value

[data.table] with columns “job.id” and “message”.

See Also

Other debug: getErrorMessages(), getStatus(), killJobs(), resetJobs(), showLog(), testJob()

batchtools documentation built on April 20, 2023, 5:09 p.m.