download_plink: Download PLINK

In bigsnpr: Analysis of Massive SNP Arrays

Download PLINK

Description

Download PLINK 1.9 from https://www.cog-genomics.org/plink2.

Download PLINK 2.0 from https://www.cog-genomics.org/plink/2.0/.

Usage

download_plink(dir = tempdir(), overwrite = FALSE, verbose = TRUE)

download_plink2(
  dir = tempdir(),
  AVX2 = TRUE,
  ARM = FALSE,
  AMD = FALSE,
  overwrite = FALSE,
  verbose = TRUE
)

Arguments

dir	The directory where to put the PLINK executable. Default is a temporary directory.
overwrite	Whether to overwrite file? Default is FALSE.
verbose	Whether to output details of downloading. Default is TRUE.
AVX2	Whether to download the AVX2 version? This is only available for 64 bits architectures. Default is TRUE.
ARM	Whether to download an ARM version. Default is FALSE.
AMD	Whether to download an AMD version. Default is FALSE.

Value

The path of the downloaded PLINK executable.

bigsnpr documentation built on Sept. 30, 2024, 9:18 a.m.