View source: R/modify-positions.R
snp_asGeneticPos | R Documentation |
Use genetic maps available at https://github.com/joepickrell/1000-genomes-genetic-maps/ to interpolate physical positions (in bp) to genetic positions (in cM).
snp_asGeneticPos(
infos.chr,
infos.pos,
dir = tempdir(),
ncores = 1,
rsid = NULL,
type = c("OMNI", "hapmap")
)
infos.chr |
Vector of integers specifying each SNP's chromosome. |
infos.pos |
Vector of integers specifying the physical position
on a chromosome (in base pairs) of each SNP. |
dir |
Directory where to download and decompress files.
Default is |
ncores |
Number of cores used. Default doesn't use parallelism.
You may use |
rsid |
If providing rsIDs, the matching is performed using those (instead of positions) and variants not matched are interpolated using spline interpolation of variants that have been matched. |
type |
Whether to use the genetic maps interpolated from "OMNI" (the default), or from "hapmap". |
The new vector of genetic positions.
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