API for brainGraph
Graph Theory Analysis of Brain MRI Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| Atlas Helpers | Man page |
| Attributes | Man page |
| BC.CI2 | Source code |
| Bootstrapping | Man page |
| Brain Atlases | Man page |
| Count Edges | Man page |
| Creating_Graphs | Man page |
| Creating_Graphs_GLM | Man page |
| Extract.brainGraphList | Man page |
| Extract.brainGraph_resids | Man page |
| Extract.corr_mats | Man page |
| GLM | Man page |
| GLM basic info | Man page |
| GLM design | Man page |
| GLM fits | Man page |
| GLM helpers | Man page |
| GLM influence measures | Man page |
| GLM model selection | Man page |
| GLM statistics | Man page |
| Graph Data Tables | Man page |
| Graph Distances | Man page |
| IndividualContributions | Man page |
| Inverse | Man page |
| Matrix utilities | Man page |
| Mediation | Man page |
| NBS | Man page Source code |
| Plotting GLM graphs | Man page |
| Random Graphs | Man page |
| Residuals | Man page |
| Rich Club | Man page |
| Utility functions | Man page |
| Vertex Roles | Man page |
| [.bg_GLM | Man page |
| [.brainGraphList | Man page |
| [.brainGraph_resids | Man page |
| [.corr_mats | Man page |
| `[.bg_GLM` | Source code |
| `[.brainGraphList` | Source code |
| `[.brainGraph_resids` | Source code |
| `[.corr_mats` | Source code |
| aal116 | Man page |
| aal2.120 | Man page |
| aal2.94 | Man page |
| aal90 | Man page |
| add_nans | Man page Source code |
| all_identical | Source code |
| analysis_random_graphs | Man page Source code |
| anova.bg_GLM | Man page Source code |
| aop | Man page Source code |
| apply_thresholds | Man page Source code |
| args_as_list | Source code |
| as_atlas | Man page Source code |
| as_brainGraphList | Man page Source code |
| auc_diff | Man page Source code |
| auc_diff_perm | Source code |
| auc_rle | Source code |
| bg_to_mediate | Man page Source code |
| boot_mediate | Source code |
| brainGraph | Man page |
| brainGraph-methods | Man page |
| brainGraph-options | Man page |
| brainGraph-package | Man page |
| brainGraphList | Man page |
| brainGraph_GLM | Man page Source code |
| brainGraph_GLM_design | Man page Source code |
| brainGraph_boot | Man page Source code |
| brainGraph_mediate | Man page Source code |
| brainGraph_permute | Man page Source code |
| brainnetome | Man page |
| brainsuite | Man page |
| by_hemi | Source code |
| case.names.NBS | Man page |
| case.names.bg_GLM | Man page Source code |
| case.names.brainGraph_resids | Man page Source code |
| case.names.mtpc | Man page |
| centr_betw_comm | Man page Source code |
| centr_lev | Man page Source code |
| check_degree | Man page Source code |
| check_if_singular | Man page Source code |
| check_sID | Man page Source code |
| check_strength | Man page Source code |
| check_weights | Man page Source code |
| choose.edges | Man page Source code |
| coef.bg_GLM | Man page Source code |
| coef_se | Source code |
| coeff_determ | Man page Source code |
| coeff_table | Man page Source code |
| coeff_var | Man page Source code |
| coeff_var.array | Source code |
| coeff_var.default | Man page Source code |
| coeff_var.matrix | Source code |
| colMax | Man page Source code |
| colMaxAbs | Man page Source code |
| colMin | Man page Source code |
| communicability | Man page Source code |
| confint.bg_GLM | Man page Source code |
| contract_brainGraph | Man page Source code |
| contrast_names | Man page Source code |
| cooks.distance.bg_GLM | Man page Source code |
| cor.diff.test | Man page Source code |
| corr.matrix | Man page Source code |
| count_homologous | Man page Source code |
| count_inter | Man page Source code |
| covratio.bg_GLM | Man page Source code |
| craddock200 | Man page |
| create_atlas | Man page Source code |
| create_dummy_vars | Source code |
| create_mats | Man page Source code |
| cxtxfun_3d | Man page Source code |
| delete_all_attr | Man page Source code |
| destrieux | Man page |
| destrieux.scgm | Man page |
| deviance.bg_GLM | Man page Source code |
| df.residual.NBS | Man page |
| df.residual.bg_GLM | Man page Source code |
| df.residual.mtpc | Man page |
| dfbeta.bg_GLM | Man page Source code |
| dfbetas.bg_GLM | Man page Source code |
| dffits.bg_GLM | Man page Source code |
| diag_sq | Man page Source code |
| dir2files | Man page Source code |
| dk | Man page |
| dk.scgm | Man page |
| dkt | Man page |
| dkt.scgm | Man page |
| dosenbach160 | Man page |
| edge_asymmetry | Man page Source code |
| edge_spatial_dist | Man page Source code |
| efficiency | Man page Source code |
| extractAIC.bg_GLM | Man page Source code |
| f_beta_3d | Source code |
| f_beta_3d_g | Source code |
| f_beta_m | Source code |
| fastLmBG | Man page Source code |
| fastLmBG_3d | Man page Source code |
| fastLmBG_3dY | Man page Source code |
| fastLmBG_3dY_1p | Man page Source code |
| fastLmBG_f | Man page Source code |
| fastLmBG_f_rand | Source code |
| fastLmBG_f_rand_3d | Source code |
| fastLmBG_t | Man page Source code |
| fastLmBG_t_rand | Source code |
| fastLmBG_t_rand_3d | Source code |
| fastquant | Source code |
| fitted.bg_GLM | Man page Source code |
| formula.NBS | Man page Source code |
| formula.bg_GLM | Man page Source code |
| formula.mtpc | Man page |
| gateway_coeff | Man page Source code |
| get.resid | Man page Source code |
| get_int | Source code |
| get_metadata | Man page Source code |
| get_rand_attrs | Man page Source code |
| get_rle_inds | Source code |
| get_thresholds | Man page Source code |
| glm_data_table | Man page Source code |
| gordon333 | Man page |
| graph_attr_dt | Man page Source code |
| graph_attr_perm | Source code |
| groups.brainGraphList | Man page Source code |
| groups.brainGraph_resids | Man page Source code |
| groups.corr_mats | Man page Source code |
| guess_atlas | Man page Source code |
| hatvalues.bg_GLM | Man page Source code |
| hcp_mmp1.0 | Man page |
| hoa112 | Man page |
| hubness | Man page Source code |
| import_scn | Man page Source code |
| influence.bg_GLM | Man page Source code |
| inv | Man page Source code |
| inv.array | Man page Source code |
| inv.list | Man page Source code |
| inv.matrix | Man page Source code |
| inv.qr | Man page Source code |
| is.brainGraph | Man page Source code |
| is.brainGraphList | Man page Source code |
| is_binary | Man page Source code |
| labels.NBS | Man page |
| labels.bg_GLM | Man page Source code |
| labels.mtpc | Man page |
| logLik.bg_GLM | Man page Source code |
| loo | Man page Source code |
| lpba40 | Man page |
| make_auc_brainGraph | Man page Source code |
| make_brainGraph | Man page Source code |
| make_brainGraph.bg_mediate | Man page Source code |
| make_brainGraph.igraph | Man page Source code |
| make_brainGraph.matrix | Man page Source code |
| make_brainGraphList | Man page Source code |
| make_brainGraphList.NBS | Man page Source code |
| make_brainGraphList.array | Man page Source code |
| make_brainGraphList.bg_GLM | Man page Source code |
| make_brainGraphList.corr_mats | Man page Source code |
| make_brainGraphList.mtpc | Man page Source code |
| make_ego_brainGraph | Man page Source code |
| make_empty_brainGraph | Man page Source code |
| make_graphs_perm | Source code |
| make_intersection_brainGraph | Man page Source code |
| matrix2list | Man page Source code |
| maxfun | Man page Source code |
| mean_distance_wt | Man page Source code |
| mtpc | Man page Source code |
| nobs.NBS | Man page |
| nobs.bg_GLM | Man page Source code |
| nobs.brainGraphList | Man page Source code |
| nobs.brainGraph_resids | Man page Source code |
| nobs.mtpc | Man page |
| normalize_mats | Source code |
| nregions | Man page Source code |
| nregions.NBS | Man page Source code |
| nregions.bg_GLM | Man page Source code |
| nregions.brainGraph_resids | Man page Source code |
| nregions.corr_mats | Man page Source code |
| nregions.mtpc | Man page |
| outer_vec | Man page Source code |
| pad_zeros | Man page Source code |
| part_coeff | Man page Source code |
| partition | Man page Source code |
| patterns | Source code |
| permute_graph_foreach | Source code |
| permute_other_foreach | Source code |
| permute_vertex_foreach | Source code |
| pinv | Man page Source code |
| plot.IC | Man page Source code |
| plot.bg_GLM | Man page Source code |
| plot.brainGraph | Man page Source code |
| plot.brainGraphList | Man page Source code |
| plot.brainGraph_GLM | Man page Source code |
| plot.brainGraph_NBS | Man page Source code |
| plot.brainGraph_boot | Man page Source code |
| plot.brainGraph_mediate | Man page Source code |
| plot.brainGraph_mtpc | Man page Source code |
| plot.brainGraph_permute | Man page Source code |
| plot.brainGraph_resids | Man page Source code |
| plot.corr_mats | Man page Source code |
| plot.mtpc | Man page Source code |
| plot_brainGraph_multi | Man page Source code |
| plot_global | Man page Source code |
| plot_mni | Source code |
| plot_rich_norm | Man page Source code |
| plot_vertex_measures | Man page Source code |
| plot_volumetric | Man page Source code |
| power264 | Man page |
| print.bg_GLM | Man page Source code |
| print.brainGraphList | Man page Source code |
| print.infl.bg_GLM | Source code |
| print.summary.IC | Source code |
| print.summary.NBS | Source code |
| print.summary.bg_GLM | Source code |
| print.summary.bg_mediate | Source code |
| print.summary.brainGraph | Source code |
| print.summary.brainGraph_boot | Source code |
| print.summary.brainGraph_permute | Source code |
| print.summary.brainGraph_resids | Source code |
| print.summary.mtpc | Source code |
| print_bg_summary | Source code |
| print_contrast_stats_summary | Source code |
| print_contrast_type_summary | Source code |
| print_full_metric | Source code |
| print_model_summary | Source code |
| print_permutation_summary | Source code |
| print_subs_summary | Source code |
| print_text_vector | Source code |
| print_title_summary | Source code |
| pvalArray | Source code |
| qr.array | Man page Source code |
| qr_Q2 | Man page Source code |
| qr_R2 | Man page Source code |
| randomise | Man page Source code |
| randomise_3d | Man page Source code |
| read.array | Source code |
| region.names | Man page Source code |
| region.names.bg_GLM | Man page Source code |
| region.names.brainGraph_resids | Man page Source code |
| region.names.corr_mats | Man page Source code |
| region.names.data.table | Man page Source code |
| region.names.mtpc | Man page |
| rename_levels | Man page Source code |
| residuals.bg_GLM | Man page Source code |
| rich_club_all | Man page Source code |
| rich_club_attrs | Man page Source code |
| rich_club_coeff | Man page Source code |
| rich_club_norm | Man page Source code |
| rich_core | Man page Source code |
| rle_comp | Source code |
| robustness | Man page Source code |
| rotation | Source code |
| rstandard.bg_GLM | Man page Source code |
| rstudent.bg_GLM | Man page Source code |
| rstudent_mat | Source code |
| s_core | Man page Source code |
| set_brainGraph_attr | Man page Source code |
| set_graph_colors | Man page Source code |
| setup_glm | Man page Source code |
| setup_randomise | Source code |
| sigma.bg_GLM | Man page Source code |
| sigma_loo | Source code |
| sim.rand.graph.clust | Man page Source code |
| sim.rand.graph.hqs | Man page Source code |
| sim.rand.graph.par | Man page Source code |
| simpleCap | Source code |
| slicer | Man page Source code |
| small.world | Man page Source code |
| sortfun | Man page Source code |
| split_string | Man page Source code |
| subset_graph | Man page Source code |
| summary.IC | Man page Source code |
| summary.NBS | Man page Source code |
| summary.bg_GLM | Man page Source code |
| summary.bg_mediate | Man page Source code |
| summary.brainGraph | Man page Source code |
| summary.brainGraph_boot | Man page Source code |
| summary.brainGraph_permute | Man page Source code |
| summary.brainGraph_resids | Man page Source code |
| summary.mtpc | Man page Source code |
| symm_mean | Man page Source code |
| symmetrize | Man page Source code |
| symmetrize.array | Man page Source code |
| symmetrize.matrix | Man page Source code |
| terms.NBS | Man page Source code |
| terms.bg_GLM | Man page Source code |
| terms.mtpc | Man page |
| threshold_consensus | Source code |
| threshold_consistency | Source code |
| threshold_density | Source code |
| threshold_mean_sd | Source code |
| threshold_raw | Source code |
| update_fs_names | Man page Source code |
| variable.names.NBS | Man page |
| variable.names.bg_GLM | Man page Source code |
| variable.names.mtpc | Man page |
| vcov.bg_GLM | Man page Source code |
| vec.transform | Man page Source code |
| vertex_attr_dt | Man page Source code |
| vertex_attr_funs | Source code |
| vertex_spatial_dist | Man page Source code |
| vif.bg_GLM | Man page Source code |
| vulnerability | Man page Source code |
| within_module_deg_z_score | Man page Source code |
| write_brainnet | Man page Source code |
| xfm.weights | Man page Source code |
