Files in crosshap
Local Haplotype Clustering and Visualization
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/crosshap-package.R
R/run_hdbscan_haplotyping.R
R/left_posplot.R
R/utils-pipe.R
R/summary_tables.R
R/pseudohaps.R
R/clustree_viz.R
R/data.R
R/run_haplotyping_wrapper.R
R/top_barplot.R
R/mid_dotplot.R
R/crosshapviz_wrapper.R
R/left_alleleplot.R
R/umap_wrapper.R
R/right_clusterplot.R
R/right_phenoplot.R
R/bot_halfeyeplot.R
R/tagphenos.R
R/utils.R
inst/bin/pseudo2haps.R
inst/bin/prototype_viz.R
inst/bin/pseudo.R
inst/bin/snps2haps.R
inst/test/example.R
build/partial.rdb
tests/testthat.R
tests/testthat/test-haplotyping.R
tests/testthat/test-crosshapviz.R
tests/testthat/test-clustree.R
tests/testthat/test-umap.R
tests/testthat/test-hapviz.R
tests/testthat/_snaps/crosshapviz/haplotype-viz-alt4data.svg
tests/testthat/_snaps/crosshapviz/haplotype-viz-isolatewt3-data.svg
tests/testthat/_snaps/crosshapviz/haplotype-viz4data.svg
tests/testthat/_snaps/crosshapviz/haplotype-viz-nolabs3data.svg
tests/testthat/_snaps/clustree/mgtreedata.svg
tests/testthat/_snaps/clustree/haptreedata.svg
data/vcf.rda
data/metadata.rda
data/HapObject.rda
data/pheno.rda
data/LD.rda
man/build_top_metaplot.Rd
man/run_hdbscan_haplotyping.Rd
man/pheno.Rd
man/arith_mode.Rd
man/prepare_hap_umap.Rd
man/mean_na.rm.Rd
man/LD.Rd
man/build_right_phenoplot.Rd
man/build_left_alleleplot.Rd
man/crosshap-package.Rd
man/build_left_posplot.Rd
man/read_metadata.Rd
man/metadata.Rd
man/vcf.Rd
man/read_vcf.Rd
man/read_pheno.Rd
man/pipe.Rd
man/pseudo_haps.Rd
man/build_bot_halfeyeplot.Rd
man/clustree_viz.Rd
man/build_mid_dotplot.Rd
man/HapObject.Rd
man/read_LD.Rd
man/build_summary_tables.Rd
man/tagphenos.Rd
man/build_right_clusterplot.Rd
man/crosshap_viz.Rd
man/run_haplotyping.Rd
man/figures/README-pressure-1.png
