Nothing
### This is an approximation starting from the SCUO values.
### The model fits is with measurement errors.
rm(list = ls())
suppressMessages(library(pbdMPI, quietly = TRUE))
init(set.seed = FALSE)
suppressMessages(library(cubfits, quietly = TRUE))
### Set environment.
source("00-set_env.r")
set.seed(simulation$seed)
case.name <- "wophi_scuo"
case.name <- paste(model, "_", case.name, sep = "")
### Check output directory.
fn.out <- paste(prefix$output, case.name, sep = "")
if(!file.exists(fn.out)){
comm.stop(paste(fn.out, " is not found.", sep = ""))
}
### Load data.
fn.in <- paste(prefix$data, "pre_process.rda", sep = "")
load(fn.in)
fn.in <- paste(prefix$data, "init_", model, ".rda", sep = "")
load(fn.in)
### Initial.
nIter <- run.info$nIter
### For configuration.
.CF.DP$dump <- run.info$dump
.CF.DP$prefix.dump <- run.info$prefix.dump
.CF.CT$parallel <- run.info$parallel
.CF.CONF$estimate.bias.Phi <- FALSE
if(.CF.CT$type.p[1] == "lognormal_bias"){
.CF.CT$type.p[1] <- "lognormal_RW"
}
### Run.
if(.CF.CT$model.Phi[1] == "logmixture"){
phi.init.SCUO <- phi.init.SCUO.emp ### lognormal fails
}
if(.CF.CONF$scale.phi.Obs || .CF.CONF$estimate.bias.Phi){
phi.init.SCUO <- phi.init.SCUO / mean(phi.init.SCUO)
}
ret <- cubappr(reu13.df.obs, phi.init.SCUO, y, n,
nIter = nIter,
p.nclass = p.nclass,
model = model, verbose = TRUE, report = 10)
### Dump results.
if(comm.rank() == 0){
ret.time <- proc.time()
print(ret.time)
fn.out <- paste(prefix$output, case.name, "/output_mcmc.rda", sep = "")
save(list = c("nIter", "ret", "ret.time"),
file = fn.out)
fn.out <- paste(prefix$output, case.name, "/output_env.rda", sep = "")
save(list = ls(envir = .cubfitsEnv),
file = fn.out, envir = .cubfitsEnv)
warnings()
}
finalize()
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