ToNewick: Write a 'data.tree' structure to Newick notation

In data.tree: General Purpose Hierarchical Data Structure

Write a data.tree structure to Newick notation

Description

To read from Newick, you can use the ape package, and convert the resulting phylo object to a data.tree structure.

Usage

ToNewick(node, heightAttribute = DefaultPlotHeight, ...)

Arguments

node	The root Node of a tree or sub-tree to be converted
heightAttribute	The attribute (field name, method, or function) storing or calculating the height for each Node
...	parameters that will be passed on the the heightAttributeName, in case it is a function

See Also

Other Conversions from Node: as.dendrogram.Node()

Examples

data(acme)
ToNewick(acme)
ToNewick(acme, heightAttribute = NULL)
ToNewick(acme, heightAttribute = function(x) DefaultPlotHeight(x, 200))
ToNewick(acme, rootHeight = 200)

data.tree documentation built on Nov. 13, 2023, 1:08 a.m.