dendextend: Extending 'Dendrogram' Functionality in R
Version 1.5.2

Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.

Browse man pages Browse package API and functions Browse package files

AuthorTal Galili [aut, cre, cph] (https://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), Yoav Benjamini [ths]
Date of publication2017-03-28 08:45:38 UTC
MaintainerTal Galili <tal.galili@gmail.com>
LicenseGPL-2 | GPL-3
Version1.5.2
URL https://cran.r-project.org/package=dendextend https://github.com/talgalili/dendextend/ https://www.r-statistics.com/tag/dendextend/ https://bioinformatics.oxfordjournals.org/content/31/22/3718
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dendextend")

Man pages

all_couple_rotations_at_k: Rotate tree branches for k
all.equal.dendrogram: Global Comparison of two (or more) dendrograms
all_unique: Check if all the elements in a vector are unique
as.dendlist: Try to coerce something into a dendlist
as_hclust_fixed: Convert dendrogram Objects to Class hclust
as.phylo.dendrogram: Convert a dendrogram into phylo
assign_dendextend_options: Populates dendextend functions into dendextend_options
assign_values_to_branches_edgePar: Assign values to edgePar of dendrogram's branches
assign_values_to_leaves_edgePar: Assign values to edgePar of dendrogram's leaves
assign_values_to_leaves_nodePar: Assign values to nodePar of dendrogram's leaves
assign_values_to_nodes_nodePar: Assign values to nodePar of dendrogram's nodes
bakers_gamma_for_2_k_matrix: Bakers Gamma for two k matrices
Bk: Bk - Calculating Fowlkes-Mallows Index for two dendrogram
Bk_permutations: Bk permutation - Calculating Fowlkes-Mallows Index for two...
Bk_plot: Bk plot - ploting the Fowlkes-Mallows Index of two dendrogram...
branches_attr_by_clusters: Change col/lwd/lty of branches based on clusters
branches_attr_by_labels: Change col/lwd/lty of branches matching labels condition
circlize_dendrogram: Plot a circlized dendrograms
click_rotate: Interactively rotate a tree object
collapse_branch: Collapse branches under a tolerance level
color_branches: Color tree's branches according to sub-clusters
colored_bars: Add colored bars to a dendrogram
color_labels: Color dend's labels according to sub-clusters
color_unique_labels: Color unique labels in a dendrogram
common_subtrees_clusters: Find clusters of common subtrees
cor_bakers_gamma: Baker's Gamma correlation coefficient
cor_common_nodes: Proportion of commong nodes between two trees
cor_cophenetic: Cophenetic correlation between two trees
cor.dendlist: Correlation matrix between a list of trees.
cor_FM_index: Correlation of FM_index for some k
count_terminal_nodes: Counts the number of terminal nodes (merging 0 nodes!)
cut_lower_fun: Cut a dendrogram - and run a function on the output
cutree_1h.dendrogram: cutree for dendrogram (by 1 height only!)
cutree_1k.dendrogram: cutree for dendrogram (by 1 k value only!)
cutree-methods: Cut a Tree (Dendrogram/hclust/phylo) into Groups of Data
d3dendrogram: Plot dendrogram to webpage and view.
d3dendro_options: Get or set current defaults for d3dendrogram
dend_diff: Plots two trees side by side, highlighting edges unique to...
dendextend_labels.dendrogram: Labels of the Leaves in a Dendrogram
dendextend_options: Access to dendextend_options
dendextend-package: Functions for extending dendrogram objects
dendlist: Creating a dendlist object from several dendrograms
DendSer.dendrogram: Tries to run DendSer on a dendrogram
dist.dendlist: Topological Distances Between Two dendrograms
distinct_edges: Finds distinct edges in one tree compared to another
dist_long: Turns a dist object to a "long" table
duplicate_leaf: Duplicate a leaf X times
entanglement: Measures entanglement between two trees
fac2num: Turns a factor into a number
find_dend: Finds a "good" dendrogram for a dist
find_k: Find the (estimated) number of clusters for a dendrogram...
fix_members_attr.dendrogram: Fix members attr in a dendrogram
flatten.dendrogram: Flatten the branches of a dendrogram's root
flip_leaves: Flip leaves
FM_index: Calculating Fowlkes-Mallows Index
FM_index_permutation: Calculating Fowlkes-Mallows Index under H0
FM_index_profdpm: Calculating Fowlkes-Mallows index using the profdpm R package
FM_index_R: Calculating Fowlkes-Mallows index in R
get_branches_heights: Get height attributes from a dendrogram
get_childrens_heights: Get height attributes from a dendrogram's children
get_leaves_attr: Get/set attributes of dendrogram's leaves
get_leaves_branches_attr: Get an attribute of the branches of a dendrogram's leaves
get_leaves_branches_col: Get the colors of the branches of a dendrogram's leaves
get_leaves_edgePar: Get edgePar of dendrogram's leaves
get_leaves_nodePar: Get nodePar of dendrogram's leaves
get_nodes_attr: Get attributes of dendrogram's nodes
get_nodes_xy: Get the x-y coordinates of a dendrogram's nodes
get_root_branches_attr: get attributes from the dendrogram's root(!) branches
ggdend: Creates dendrogram plot using ggplot.
hang.dendrogram: Hang dendrogram leaves
has_component_in_attribute: Does a dendrogram has an edgePar/nodePar component?
heights_per_k.dendrogram: Which height will result in which k for a dendrogram
highlight_branches: Highlight a dendrogram's branches heights via color and...
highlight_distinct_edges: Highlight distint edges in a tree (compared to another one)
identify.dendrogram: Identify Clusters in a Dendrogram (not hclust)
intersect_trees: Intersect trees
is.natural.number: Check if numbers are natural
is_null_list: Checks if the value is and empty list()
is_some_class: Is the object of some class
khan: Microarray gene expression dataset from Khan et al., 2001....
labels-assign: "label" assignment operator
labels_cex: Retrieve/assign cex to the labels of a dendrogram
labels_colors: Retrieve/assign colors to the labels of a dendrogram
ladderize: Ladderize a Tree
leaf_Colors: Return the leaf Colors of a dendrogram
lowest_common_branch: Find lowest common branch were the two items are shared
match_order_by_labels: Adjust the order of one dendrogram based on another (using...
match_order_dendrogram_by_old_order: Adjust the order of one dendrogram based on another (using...
na_locf: Last Observation Carried Forward
nleaves: Counts the number of leaves in a tree
nnodes: Counts the number of nodes (Vertices) in a tree
noded_with_condition: Find which nodes satisfies a condition
order.dendrogram-assign: order.dendrogram<- assignment operator
order.hclust: Ordering of the Leaves in a hclust Dendrogram
partition_leaves: A list with labels for each subtree (edge)
plot_horiz.dendrogram: Plotting a left-tip-adjusted horizontal dendrogram
prune: Prunes a tree (using leaves' labels)
prune_common_subtrees.dendlist: Prune trees to their common subtrees
prune_leaf: Trims one leaf from a dendrogram
pvclust_show_signif: The significant branches in a dendrogram, based on a pvclust...
pvclust_show_signif_gradient: Significance gradient of branches in a dendrogram (via...
raise.dendrogram: Raise the height of a dendrogram tree
rank_branches: Rank branches' heights
rank_order.dendrogram: Fix rank of leaves order values in a dendrogram
rank_values_with_clusters: Rank a vector based on clusters
rect.dendrogram: Draw Rectangles Around a Dendrogram's Clusters
reexports: Objects exported from other packages
remove_branches_edgePar: Remove all edgePar values from a dendrogram's branches
remove_leaves_nodePar: Remove all nodePar values from a dendrogram's leaves
remove_nodes_nodePar: Remove all nodePar values from a dendrogram's nodes
rllply: recursivly apply a function on a list
rotate: Rotate a tree object
rotate_DendSer: Rotates dend based on DendSer
sample.dendrogram: Sample a tree
seriate_dendrogram: Rotates a dendrogram based on a seriation of a distance...
set: Set (/update) features to a dendrogram
set_labels: Set/place new labels in a dendrogram
shuffle: Random rotation of trees
sort_2_clusters_vectors: Sorts two clusters vector by their names
sort_dist_mat: Sorts a distance matrix by rows and columns names
sort_levels_values: Sort the values level in a vector
tanglegram: Tanglegram plot
theme_dendro: Creates completely blank theme in ggplot
unbranch: unbranch trees
unclass_dend: unclass an entire dendrogram tree
untangle: untangle dendrograms
untangle_DendSer: Tries to run DendSer on a dendrogram
untangle_random_search: Untangle - random search
untangle_step_rotate_1side: Stepwise untangle one tree compared to another
untangle_step_rotate_2side: Stepwise untangle two trees one at a time
which_leaf: Which node is a leaf?
which_node: Which node id is common to a group of labels

Functions

Bk Man page Source code
Bk_permutations Man page Source code
Bk_plot Man page Source code
DendSer.dendrogram Man page Source code
FM_index Man page Source code
FM_index_R Man page Source code
FM_index_permutation Man page Source code
FM_index_profdpm Man page Source code
Size.dist Source code
\%>\% Man page
add_zzz Source code
all.equal.dendlist Man page Source code
all.equal.dendrogram Man page Source code
allNA Source code
all_couple_rotations_at_k Man page Source code
all_unique Man page Source code
as.dendlist Man page Source code
as.dendrogram.phylo Source code
as.dendrogram.pvclust Source code
as.dendrogram.varclus Source code
as.ggdend Man page Source code
as.ggdend.dendrogram Man page Source code
as.hclust.pvclust Source code
as.json.dendrogram Source code
as.phylo Source code
as.phylo.dendrogram Man page Source code
as_hclust_fixed Man page Source code
assign_dendextend_options Man page Source code
assign_values_to_branches_edgePar Man page Source code
assign_values_to_leaves_edgePar Man page Source code
assign_values_to_leaves_nodePar Man page Source code
assign_values_to_nodes_nodePar Man page Source code
bakers_gamma_for_2_k_matrix Man page Source code
branches_attr_by_clusters Man page Source code
branches_attr_by_labels Man page Source code
branches_color Man page
circlize_dendrogram Man page Source code
click_rotate Man page Source code
click_rotate.default Man page Source code
click_rotate.dendrogram Man page Source code
collapse_branch Man page Source code
collapse_pipes_zzz Source code
collapse_with_pipes Source code
color_branches Man page Source code
color_labels Man page Source code
color_labels_by_labels Source code
color_unique_labels Man page Source code
colored_bars Man page Source code
colour_branches Man page
colour_labels Man page
common_subtrees_clusters Man page Source code
cor.dendlist Man page Source code
cor_FM_index Man page Source code
cor_bakers_gamma Man page Source code
cor_bakers_gamma.default Man page Source code
cor_bakers_gamma.dendlist Man page Man page Source code
cor_bakers_gamma.dendrogram Man page Man page Source code
cor_bakers_gamma.hclust Man page Man page Source code
cor_common_nodes Man page Source code
cor_cophenetic Man page Source code
cor_cophenetic.default Man page Source code
cor_cophenetic.dendlist Man page Source code
count_terminal_nodes Man page Source code
cut_lower_fun Man page Source code
cutree Man page Source code
cutree.default Man page Source code
cutree.dendrogram Man page Source code
cutree.hclust Man page Source code
cutree.phylo Man page Source code
cutree_1h.dendrogram Man page Source code
cutree_1k.dendrogram Man page Source code
d3dendro_defaults Source code
d3dendro_options Man page Source code
d3dendro_template Source code
d3dendrogram Man page Source code
dend_diff Man page Source code
dend_diff.dendlist Man page Source code
dend_diff.dendrogram Man page Source code
dend_expend Man page Source code
dendbackback Man page
dendextend Man page
dendextend-package Man page
dendextendWelcomeMessage Source code
dendextend_cut_lower_fun Man page Source code
dendextend_get_branches_heights Man page Source code
dendextend_heights_per_k.dendrogram Man page Source code
dendextend_labels.dendrogram Man page Source code
dendextend_options Man page
dendlist Man page Source code
dendrogram_data Source code
dist.dendlist Man page Source code
dist_long Man page Source code
distinct_edges Man page Source code
duplicate_leaf Man page Source code
edgeset_dist Source code
entanglement Man page Source code
entanglement.default Source code
entanglement.dendlist Man page Source code
entanglement.dendrogram Man page Source code
entanglement.hclust Man page Source code
entanglement.phylo Man page Source code
entanglement_return_best_brother Source code
fac2num Man page Source code
find_dend Man page Source code
find_k Man page Source code
fix_members_attr.dendrogram Man page Source code
flatten.dendrogram Man page Source code
flip_1_and_2 Source code
flip_leaves Man page Source code
flip_strings Source code
get_all_leaves Source code
get_branches_heights Man page Source code
get_childrens_heights Man page Source code
get_leaves_attr Man page Source code
get_leaves_branches_attr Man page Source code
get_leaves_branches_col Man page Source code
get_leaves_edgePar Man page Source code
get_leaves_nodePar Man page Source code
get_nodes_attr Man page Source code
get_nodes_xy Man page Source code
get_root_branches_attr Man page Source code
ggdend Man page Source code
ggplot.dendrogram Man page Source code
ggplot.ggdend Man page Source code
hang.dendrogram Man page Source code
has_component_in_attribute Man page Source code
has_edgePar Man page Source code
has_nodePar Man page Source code
hc2axes Source code
hc2split Source code
head.dendlist Source code
head.dendrogram Source code
heights_per_k.dendrogram Man page Source code
highlight_branches Man page Source code
highlight_branches_col Man page Source code
highlight_branches_lwd Man page Source code
highlight_distinct_edges Man page Source code
highlight_distinct_edges.dendlist Man page Source code
highlight_distinct_edges.dendrogram Man page Source code
identify.dendrogram Man page Source code
intersect_trees Man page Source code
is.dendlist Man page Source code
is.dendrogram Man page Source code
is.dist Man page Source code
is.hclust Man page Source code
is.infinite2 Source code
is.natural.number Man page Source code
is.phylo Man page Source code
is_null_list Man page Source code
is_some_class Man page
khan Man page
labels.dendrogram Source code
labels.hclust Man page Source code
labels.phylo Man page Source code
labels<- Man page
labels<-.default Man page
labels<-.dendrogram Man page
labels<-.hclust Man page
labels<-.phylo Man page
labels_cex Man page Source code
labels_cex<- Man page
labels_col Man page
labels_colors Man page Source code
labels_colors<- Man page
ladderize Man page Source code
ladderize.dendlist Man page Source code
ladderize.dendrogram Man page Source code
ladderize.phylo Man page Source code
leaf_Colors Man page Source code
leaf_colors Man page
lowest_common_branch Man page Source code
lty_branches Source code
map_values_to_scale Source code
match_order_by_labels Man page Source code
match_order_dendrogram_by_old_order Man page Source code
max_labels_height Source code
midDend2 Source code
na_locf Man page Source code
nleaves Man page Source code
nleaves.default Man page Source code
nleaves.dendlist Man page Source code
nleaves.dendrogram Man page Source code
nleaves.hclust Man page Source code
nleaves.phylo Man page Source code
nnodes Man page Source code
nnodes.default Man page Source code
nnodes.dendrogram Man page Source code
nnodes.hclust Man page Source code
nnodes.phylo Man page Source code
noded_with_condition Man page Source code
nodes_with_shared_labels Source code
normalize Source code
onAttach Source code
onLoad Source code
order.dendrogram<- Man page
order.hclust Man page Source code
partition_leaves Man page Source code
place_labels Man page Source code
plot.dendlist Man page Source code
plot.find_k Man page Source code
plotNode2 Source code
plotNodeLimit2 Source code
plotNode_horiz Source code
plot_horiz.dendrogram Man page Source code
prepare.ggdend Man page Source code
prune Man page Source code
prune.default Man page Source code
prune.dendrogram Man page Source code
prune.hclust Man page Source code
prune.phylo Man page Source code
prune.rpart Man page Source code
prune_common_subtrees.dendlist Man page Source code
prune_leaf Man page Source code
pvclust_show_signif Man page Source code
pvclust_show_signif_gradient Man page Source code
pvrect2 Source code
rainbow_fun Source code
raise.dendrogram Man page Source code
rank_branches Man page Source code
rank_order.dendrogram Man page Source code
rank_values_with_clusters Man page Source code
rect.dendrogram Man page Source code
reexports Man page
remove_branches_edgePar Man page Source code
remove_dendextend_options Source code
remove_leaves_nodePar Man page Source code
remove_nodes_nodePar Man page Source code
remove_pipes_and_zzz Source code
remove_zzz Source code
replace_unique_items_with_0_and_rank Source code
rescale Source code
rev.hclust Man page Source code
rllply Man page Source code
rotate Man page Source code
rotate.default Man page Source code
rotate.dendrogram Man page Source code
rotate.hclust Man page Source code
rotate.phylo Man page Source code
rotate_DendSer Man page Source code
rotated_str_dim Source code
sample.dendrogram Man page Source code
seriate_dendrogram Man page Source code
set Man page Source code
set.data.table Man page Source code
set.dendlist Man page Source code
set.dendrogram Man page Source code
set_labels Man page Source code
shuffle Man page Source code
shuffle.default Man page Source code
shuffle.dendlist Man page Source code
shuffle.dendrogram Man page
shuffle.hclust Man page
shuffle.phylo Man page
sort.dendlist Man page Source code
sort.dendrogram Man page Source code
sort.hclust Man page Source code
sort_2_clusters_vectors Man page Source code
sort_dist_mat Man page Source code
sort_levels_values Man page Source code
stats_.memberDend Source code
stats_.midDend Source code
stats_midcache.dendrogram Source code
stats_plotNode Source code
stats_plotNodeLimit Source code
tanglegram Man page Source code
tanglegram.default Man page Source code
tanglegram.dendlist Man page Source code
tanglegram.dendrogram Man page Source code
tanglegram.hclust Man page Source code
tanglegram.phylo Man page Source code
text.pvclust Source code
theme_dendro Man page Source code
unbranch Man page Source code
unbranch.default Man page Source code
unbranch.dendrogram Man page Source code
unbranch.hclust Man page Source code
unbranch.phylo Man page Source code
unclass_dend Man page Source code
untangle Man page Source code
untangle.default Man page Source code
untangle.dendlist Man page Source code
untangle.dendrogram Man page Source code
untangle_DendSer Man page Source code
untangle_best_k_to_rotate_by_1side Source code
untangle_best_k_to_rotate_by_2side_backNforth Source code
untangle_evolution Source code
untangle_intercourse Source code
untangle_intercourse_evolution Source code
untangle_labels Man page Source code
untangle_random_search Man page Source code
untangle_step_rotate_1side Man page Source code
untangle_step_rotate_2side Man page Source code
which_leaf Man page Source code
which_node Man page Source code
zero_range Source code

Files

TODO
inst
inst/CITATION
inst/doc
inst/doc/FAQ.Rmd
inst/doc/Cluster_Analysis.html
inst/doc/FAQ.html
inst/doc/Cluster_Analysis.R
inst/doc/Quick_Introduction.Rmd
inst/doc/Quick_Introduction.html
inst/doc/Cluster_Analysis.Rmd
inst/doc/introduction.R
inst/doc/introduction.html
inst/doc/Quick_Introduction.R
inst/doc/introduction.Rmd
inst/doc/FAQ.R
tests
tests/testthat
tests/testthat/test-entanglement.R
tests/testthat/test-dendlist.R
tests/testthat/test-cor_bakers_gamma.R
tests/testthat/test-rotate.R
tests/testthat/test-bk_method.R
tests/testthat/test-attr_access.R
tests/testthat/test-ggdend.R
tests/testthat/test-cutree.dendrogram.R
tests/testthat/test-set.dendrogram.R
tests/testthat/test-cut_lower_fun.R
tests/testthat/test-trim.R
tests/testthat/test-untangle.R
tests/testthat/test-rect.dendrogram.R
tests/testthat/test-labels_colors.R
tests/testthat/test-distinct_edges.R
tests/testthat/test-nleaves.R
tests/testthat/test-general.R
tests/testthat/test-unbranch.R
tests/testthat/test-labels-assign.R
tests/testthat/test-common_subtrees.R
tests/testthat/test-branches_attr_by.R
tests/testthat/test-cor_cophenetic.R
tests/test-all.R
NAMESPACE
demo
demo/dendextend.R
demo/00Index
NEWS
NEWS.md
data
data/khan.rda
R
R/pvclust.R
R/cut_lower_fun.R
R/rect.dendrogram.R
R/attr_access.R
R/cutree.dendrogram.R
R/dendextend-package.R
R/is.functions.R
R/noded_with_condition.R
R/nleaves.R
R/d3dendrogram.R
R/DendSer.R
R/all.equal.R
R/cor_bakers_gamma.R
R/ggdend.R
R/colored_bars.R
R/circlize.R
R/labels_colors.R
R/sample.dendrogram.R
R/cor_cophenetic.R
R/seriate_dendrogram.R
R/highlight_branches.R
R/dendlist.R
R/magrittr.R
R/common_subtrees.R
R/entanglement.R
R/data.R
R/stats_imports.R
R/rotate.R
R/dist_long.R
R/Hmisc.R
R/distinct_edges.R
R/ggdendro.R
R/dendextend.R
R/tanglegram.R
R/set.dendrogram.R
R/bk_method.R
R/has_edgePar.R
R/color_branches.R
R/ape.R
R/untangle.R
R/as.dendrogram.randomForest.R
R/branches_attr_by.R
R/unbranch.R
R/labels.R
R/cor.dendlist.R
R/get_nodes_xy.R
R/rainbow_fun.R
R/prune.R
R/dendextend_options.R
R/zzz.R
R/find_k.R
R/find_dend.R
vignettes
vignettes/FAQ.Rmd
vignettes/Quick_Introduction.Rmd
vignettes/Cluster_Analysis.Rmd
vignettes/disabled
vignettes/disabled/dendextend-tutorial.rnw
vignettes/introduction.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/remove_leaves_nodePar.Rd
man/remove_branches_edgePar.Rd
man/rank_order.dendrogram.Rd
man/labels_colors.Rd
man/dist.dendlist.Rd
man/get_root_branches_attr.Rd
man/set.Rd
man/rllply.Rd
man/sample.dendrogram.Rd
man/dist_long.Rd
man/highlight_distinct_edges.Rd
man/cor_common_nodes.Rd
man/pvclust_show_signif.Rd
man/nleaves.Rd
man/tanglegram.Rd
man/as.phylo.dendrogram.Rd
man/order.hclust.Rd
man/partition_leaves.Rd
man/get_childrens_heights.Rd
man/hang.dendrogram.Rd
man/which_leaf.Rd
man/FM_index_permutation.Rd
man/d3dendrogram.Rd
man/color_unique_labels.Rd
man/labels-assign.Rd
man/leaf_Colors.Rd
man/get_nodes_xy.Rd
man/click_rotate.Rd
man/assign_values_to_branches_edgePar.Rd
man/is.natural.number.Rd
man/theme_dendro.Rd
man/seriate_dendrogram.Rd
man/fix_members_attr.dendrogram.Rd
man/ggdend.Rd
man/khan.Rd
man/fac2num.Rd
man/raise.dendrogram.Rd
man/prune_common_subtrees.dendlist.Rd
man/dendlist.Rd
man/distinct_edges.Rd
man/color_branches.Rd
man/assign_values_to_nodes_nodePar.Rd
man/flatten.dendrogram.Rd
man/get_nodes_attr.Rd
man/is_some_class.Rd
man/rank_values_with_clusters.Rd
man/sort_2_clusters_vectors.Rd
man/rotate.Rd
man/heights_per_k.dendrogram.Rd
man/all_couple_rotations_at_k.Rd
man/flip_leaves.Rd
man/rank_branches.Rd
man/find_dend.Rd
man/which_node.Rd
man/FM_index_profdpm.Rd
man/highlight_branches.Rd
man/cor_bakers_gamma.Rd
man/identify.dendrogram.Rd
man/all.equal.dendrogram.Rd
man/assign_dendextend_options.Rd
man/untangle_random_search.Rd
man/untangle_step_rotate_1side.Rd
man/dendextend-package.Rd
man/unbranch.Rd
man/pvclust_show_signif_gradient.Rd
man/cutree_1k.dendrogram.Rd
man/match_order_dendrogram_by_old_order.Rd
man/intersect_trees.Rd
man/cutree_1h.dendrogram.Rd
man/prune.Rd
man/color_labels.Rd
man/DendSer.dendrogram.Rd
man/Bk_plot.Rd
man/circlize_dendrogram.Rd
man/duplicate_leaf.Rd
man/dendextend_labels.dendrogram.Rd
man/get_branches_heights.Rd
man/rect.dendrogram.Rd
man/untangle.Rd
man/has_component_in_attribute.Rd
man/reexports.Rd
man/remove_nodes_nodePar.Rd
man/as.dendlist.Rd
man/prune_leaf.Rd
man/get_leaves_branches_attr.Rd
man/rotate_DendSer.Rd
man/cor_FM_index.Rd
man/Bk.Rd
man/cutree-methods.Rd
man/cor_cophenetic.Rd
man/get_leaves_attr.Rd
man/count_terminal_nodes.Rd
man/as_hclust_fixed.Rd
man/sort_levels_values.Rd
man/untangle_DendSer.Rd
man/branches_attr_by_labels.Rd
man/entanglement.Rd
man/sort_dist_mat.Rd
man/get_leaves_nodePar.Rd
man/match_order_by_labels.Rd
man/plot_horiz.dendrogram.Rd
man/unclass_dend.Rd
man/FM_index.Rd
man/untangle_step_rotate_2side.Rd
man/noded_with_condition.Rd
man/d3dendro_options.Rd
man/dend_diff.Rd
man/all_unique.Rd
man/order.dendrogram-assign.Rd
man/na_locf.Rd
man/assign_values_to_leaves_edgePar.Rd
man/assign_values_to_leaves_nodePar.Rd
man/dendextend_options.Rd
man/Bk_permutations.Rd
man/nnodes.Rd
man/colored_bars.Rd
man/is_null_list.Rd
man/labels_cex.Rd
man/get_leaves_branches_col.Rd
man/ladderize.Rd
man/cut_lower_fun.Rd
man/find_k.Rd
man/collapse_branch.Rd
man/FM_index_R.Rd
man/get_leaves_edgePar.Rd
man/lowest_common_branch.Rd
man/cor.dendlist.Rd
man/common_subtrees_clusters.Rd
man/bakers_gamma_for_2_k_matrix.Rd
man/shuffle.Rd
man/branches_attr_by_clusters.Rd
man/set_labels.Rd
dendextend documentation built on May 19, 2017, 1:15 p.m.