Files in dendextend
Extending 'dendrogram' Functionality in R
MD5
ChangeLog
NEWS
NEWS.md
README.md
NAMESPACE
DESCRIPTION
TODO
R/Hmisc.R
R/rect.dendrogram.R
R/rainbow_fun.R
R/dendlist.R
R/is.functions.R
R/find_dend.R
R/color_branches.R
R/branches_attr_by.R
R/pvclust.R
R/stats_imports.R
R/get_nodes_xy.R
R/ggdend.R
R/entanglement.R
R/rotate.R
R/circlize.R
R/highlight_branches.R
R/ggdendro.R
R/data.R
R/nleaves.R
R/common_subtrees.R
R/bk_method.R
R/tanglegram.R
R/depth.R
R/dendextend-package.R
R/cor.dendlist.R
R/cor_bakers_gamma.R
R/find_k.R
R/untangle.R
R/noded_with_condition.R
R/unbranch.R
R/get_subdendrograms.R
R/dendextend_options.R
R/prune.R
R/dist_long.R
R/cor_cophenetic.R
R/attr_access.R
R/dendextend.R
R/sample.dendrogram.R
R/zzz.R
R/cutree.dendrogram.R
R/labels_colors.R
R/ape.R
R/as.dendrogram.randomForest.R
R/colored_bars.R
R/has_edgePar.R
R/all.equal.R
R/cut_lower_fun.R
R/DendSer.R
R/set.dendrogram.R
R/seriate_dendrogram.R
R/colored_dots.R
R/distinct_edges.R
R/magrittr.R
R/labels.R
inst/CITATION
inst/WORDLIST
inst/doc/FAQ.html
inst/doc/Cluster_Analysis.Rmd
inst/doc/Quick_Introduction.html
inst/doc/Quick_Introduction.Rmd
inst/doc/Cluster_Analysis.html
inst/doc/dendextend.Rmd
inst/doc/Quick_Introduction.R
inst/doc/Cluster_Analysis.R
inst/doc/dendextend.R
inst/doc/FAQ.R
inst/doc/dendextend.html
inst/doc/FAQ.Rmd
demo/00Index
demo/dendextend.R
build/vignette.rds
tests/test-all.R
tests/testthat/test-highlight_branches.R
tests/testthat/test-general.R
tests/testthat/test-ggdend.R
tests/testthat/test-cor_cophenetic.R
tests/testthat/test-cutree.dendrogram.R
tests/testthat/test-branches_attr_by.R
tests/testthat/test-cor_bakers_gamma.R
tests/testthat/test-pvclust_extract.R
tests/testthat/test-rotate.R
tests/testthat/test-cut_lower_fun.R
tests/testthat/test-entanglement.R
tests/testthat/test-get_subdendrograms.R
tests/testthat/test-untangle.R
tests/testthat/test-labels_colors.R
tests/testthat/test-trim.R
tests/testthat/test-attr_access.R
tests/testthat/test-rect.dendrogram.R
tests/testthat/test-distinct_edges.R
tests/testthat/test-set.dendrogram.R
tests/testthat/test-bk_method.R
tests/testthat/test-unbranch.R
tests/testthat/test-nleaves.R
tests/testthat/test-find_dendrogram.R
tests/testthat/test-common_subtrees.R
tests/testthat/test-labels-assign.R
tests/testthat/test-dendlist.R
vignettes/Cluster_Analysis.Rmd
vignettes/Quick_Introduction.Rmd
vignettes/dendextend.Rmd
vignettes/FAQ.Rmd
data/khan.rda
man/rotate_DendSer.Rd
man/dendextend-package.Rd
man/order.dendrogram-assign.Rd
man/cor_FM_index.Rd
man/cutree_1h.dendrogram.Rd
man/dist_long.Rd
man/DendSer.dendrogram.Rd
man/rotate.Rd
man/khan.Rd
man/get_nodes_xy.Rd
man/find_dendrogram.Rd
man/assign_values_to_leaves_edgePar.Rd
man/cor.dendlist.Rd
man/unclass_dend.Rd
man/is_some_class.Rd
man/colored_dots.Rd
man/set.Rd
man/as_hclust_fixed.Rd
man/as.phylo.dendrogram.Rd
man/identify.dendrogram.Rd
man/reexports.Rd
man/prune.Rd
man/which_leaf.Rd
man/highlight_distinct_edges.Rd
man/branches_attr_by_labels.Rd
man/cutree_1k.dendrogram.Rd
man/leaf_Colors.Rd
man/fac2num.Rd
man/lowest_common_branch.Rd
man/fix_members_attr.dendrogram.Rd
man/pvclust_show_signif_gradient.Rd
man/untangle_random_search.Rd
man/count_terminal_nodes.Rd
man/get_nodes_attr.Rd
man/colored_bars.Rd
man/flatten.dendrogram.Rd
man/common_subtrees_clusters.Rd
man/nleaves.Rd
man/get_childrens_heights.Rd
man/set_labels.Rd
man/untangle_DendSer.Rd
man/get_leaves_edgePar.Rd
man/remove_branches_edgePar.Rd
man/cor_cophenetic.Rd
man/assign_values_to_leaves_nodePar.Rd
man/cor_common_nodes.Rd
man/distinct_edges.Rd
man/prune_leaf.Rd
man/pvrect2.Rd
man/entanglement.Rd
man/flip_leaves.Rd
man/match_order_dendrogram_by_old_order.Rd
man/sort_dist_mat.Rd
man/na_locf.Rd
man/cutree-methods.Rd
man/Bk_permutations.Rd
man/all_couple_rotations_at_k.Rd
man/noded_with_condition.Rd
man/color_labels.Rd
man/hang.dendrogram.Rd
man/nnodes.Rd
man/match_order_by_labels.Rd
man/click_rotate.Rd
man/color_branches.Rd
man/FM_index_permutation.Rd
man/sample.dendrogram.Rd
man/get_leaves_attr.Rd
man/pvclust_show_signif.Rd
man/dist.dendlist.Rd
man/raise.dendrogram.Rd
man/collapse_branch.Rd
man/color_unique_labels.Rd
man/untangle_step_rotate_1side.Rd
man/find_k.Rd
man/duplicate_leaf.Rd
man/intersect_trees.Rd
man/get_root_branches_attr.Rd
man/Bk_plot.Rd
man/reindex_dend.Rd
man/theme_dendro.Rd
man/find_dend.Rd
man/branches_attr_by_clusters.Rd
man/circlize_dendrogram.Rd
man/order.hclust.Rd
man/get_subdendrograms.Rd
man/get_leaves_branches_attr.Rd
man/assign_dendextend_options.Rd
man/cut_lower_fun.Rd
man/dendextend_options.Rd
man/labels_colors.Rd
man/is_null_list.Rd
man/labels_cex.Rd
man/dendlist.Rd
man/remove_leaves_nodePar.Rd
man/branches_attr_by_lists.Rd
man/highlight_branches.Rd
man/remove_nodes_nodePar.Rd
man/get_branches_heights.Rd
man/cor_bakers_gamma.Rd
man/assign_values_to_branches_edgePar.Rd
man/untangle_step_rotate_2side.Rd
man/as.dendlist.Rd
man/all.equal.dendrogram.Rd
man/has_component_in_attribute.Rd
man/labels-assign.Rd
man/FM_index.Rd
man/heights_per_k.dendrogram.Rd
man/which_node.Rd
man/pvclust_edges.Rd
man/partition_leaves.Rd
man/all_unique.Rd
man/depth.Rd
man/tanglegram.Rd
man/prune_common_subtrees.dendlist.Rd
man/rank_order.dendrogram.Rd
man/collapse_labels.Rd
man/seriate_dendrogram.Rd
man/rllply.Rd
man/plot_horiz.dendrogram.Rd
man/dend_diff.Rd
man/assign_values_to_nodes_nodePar.Rd
man/rect.dendrogram.Rd
man/rank_values_with_clusters.Rd
man/Bk.Rd
man/is.natural.number.Rd
man/ladderize.Rd
man/FM_index_R.Rd
man/shuffle.Rd
man/untangle.Rd
man/get_leaves_branches_col.Rd
man/rank_branches.Rd
man/unbranch.Rd
man/sort_levels_values.Rd
man/bakers_gamma_for_2_k_matrix.Rd
man/get_leaves_nodePar.Rd
man/ggdend.Rd
man/sort_2_clusters_vectors.Rd
