find_dendrogram: Search for the sub-dendrogram structure composed of selected...

In dendextend: Extending 'dendrogram' Functionality in R

Search for the sub-dendrogram structure composed of selected labels

Description

Given a dendrogram object, the function performs a recursive DFS algorithm to determine the sub-dendrogram which is composed of (exactly) all 'selected_labels'.

Usage

find_dendrogram(dend, selected_labels)

Arguments

dend	a dendrogram object
selected_labels	A character vector with the labels we expect to have in the sub-dendrogram. This doesn't have to be in the same order as in the dendrogram.

Value

Either a sub-dendrogram composed of only members of selected_labels. If such a sub-dendrogram doesn't exist, the function returns NULL.

Examples

## Not run: 
# define dendrogram object to play with:
dend <- iris[, -5] %>%
  dist() %>%
  hclust() %>%
  as.dendrogram() %>%
  set("labels_to_character") %>%
  color_branches(k = 5)
first.subdend.only <- names(cutree(dend, 4)[cutree(dend, 4) == 1])
sub.dend <- find_dendrogram(dend, first.subdend.only)
# Plotting the result
par(mfrow = c(1, 2))
plot(dend, main = "Original dendrogram")
plot(sub.dend, main = "First subdendrogram")

  dend <- 1:10 %>%
dist() %>%
  hclust() %>%
  as.dendrogram() %>%
  set("labels_to_character") %>%
  color_branches(k = 5)

selected_labels <- as.character(1:4)
sub_dend <- find_dendrogram(dend, selected_labels)
plot(dend, main = "Original dendrogram")
plot(sub_dend, main = "First subdendrogram")



## End(Not run)

dendextend documentation built on March 31, 2023, 10:17 p.m.