API for dendextend
Extending 'dendrogram' Functionality in R
| Global functions | |
|---|---|
| %>% | Man page |
| .midDend2 | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| Bk | Man page Source code |
| Bk_permutations | Man page Source code |
| Bk_plot | Man page Source code |
| DendSer.dendrogram | Man page Source code |
| FM_index | Man page Source code |
| FM_index_R | Man page Source code |
| FM_index_permutation | Man page Source code |
| Size.dist | Source code |
| `labels<-.default` | Source code |
| `labels<-.dendrogram` | Source code |
| `labels<-.dist` | Source code |
| `labels<-.hclust` | Source code |
| `labels<-.phylo` | Source code |
| `labels<-` | Source code |
| `order.dendrogram<-` | Source code |
| add_zzz | Source code |
| all.equal.dendlist | Man page Source code |
| all.equal.dendrogram | Man page Source code |
| allNA | Source code |
| all_couple_rotations_at_k | Man page Source code |
| all_unique | Man page Source code |
| as.dendlist | Man page Source code |
| as.dendrogram.phylo | Source code |
| as.dendrogram.pvclust | Source code |
| as.dendrogram.varclus | Source code |
| as.ggdend | Man page Source code |
| as.ggdend.dendrogram | Man page Source code |
| as.hclust.pvclust | Source code |
| as.phylo | Source code |
| as.phylo.dendrogram | Man page Source code |
| as_hclust_fixed | Man page Source code |
| assign_dendextend_options | Man page Source code |
| assign_values_to_branches_edgePar | Man page Source code |
| assign_values_to_leaves_edgePar | Man page Source code |
| assign_values_to_leaves_nodePar | Man page Source code |
| assign_values_to_nodes_nodePar | Man page Source code |
| bakers_gamma_for_2_k_matrix | Man page Source code |
| branches_attr_by_clusters | Man page Source code |
| branches_attr_by_labels | Man page Source code |
| branches_attr_by_lists | Man page Source code |
| branches_color | Man page |
| calinhara | Source code |
| circlize_dendrogram | Man page Source code |
| click_rotate | Man page Source code |
| click_rotate.default | Man page Source code |
| click_rotate.dendrogram | Man page Source code |
| cluster.stats | Source code |
| collapse_branch | Man page Source code |
| collapse_labels | Man page Source code |
| collapse_labels_0 | Source code |
| collapse_pipes_zzz | Source code |
| collapse_with_pipes | Source code |
| color_branches | Man page Source code |
| color_branches_by_clusters | Source code |
| color_labels | Man page Source code |
| color_labels_by_labels | Source code |
| color_unique_labels | Man page Source code |
| colored_bars | Man page Source code |
| colored_dots | Man page Source code |
| colour_branches | Man page |
| colour_labels | Man page |
| common_subtrees_clusters | Man page Source code |
| cor.dendlist | Man page Source code |
| cor_FM_index | Man page Source code |
| cor_bakers_gamma | Man page Source code |
| cor_bakers_gamma.default | Man page Source code |
| cor_bakers_gamma.dendlist | Man page Source code |
| cor_bakers_gamma.dendrogram | Man page Source code |
| cor_bakers_gamma.hclust | Man page Source code |
| cor_common_nodes | Man page Source code |
| cor_cophenetic | Man page Source code |
| cor_cophenetic.default | Man page Source code |
| cor_cophenetic.dendlist | Man page Source code |
| count_terminal_nodes | Man page Source code |
| cut_lower_fun | Man page Source code |
| cutree | Man page Source code |
| cutree.agnes | Man page Source code |
| cutree.default | Man page Source code |
| cutree.dendrogram | Man page Source code |
| cutree.diana | Man page Source code |
| cutree.hclust | Man page Source code |
| cutree.phylo | Man page Source code Source code |
| cutree_1h.dendrogram | Man page Source code |
| cutree_1k.dendrogram | Man page Source code |
| dend_diff | Man page Source code |
| dend_diff.dendlist | Man page Source code |
| dend_diff.dendrogram | Man page Source code |
| dend_expend | Man page Source code |
| dendbackback | Man page |
| dendextend | Man page |
| dendextend-package | Man page |
| dendextendWelcomeMessage | Source code |
| dendextend_cut_lower_fun | Man page |
| dendextend_heights_per_k.dendrogram | Man page |
| dendextend_options | Man page |
| dendlist | Man page Source code |
| dendrogram_data | Source code |
| dist.dendlist | Man page Source code |
| dist_long | Man page Source code |
| distcritmulti | Source code |
| distinct_edges | Man page Source code |
| dudahart2 | Source code |
| duplicate_leaf | Man page Source code |
| edgeset_dist | Source code |
| entanglement | Man page Source code |
| entanglement.default | Source code |
| entanglement.dendlist | Man page Source code |
| entanglement.dendrogram | Man page Source code |
| entanglement.hclust | Man page Source code |
| entanglement.phylo | Man page Source code |
| entanglement_return_best_brother | Source code |
| fac2num | Man page Source code |
| find_dend | Man page Source code |
| find_dendrogram | Man page Source code |
| find_k | Man page Source code |
| fix_members_attr.dendrogram | Man page Source code |
| flatten.dendrogram | Man page Source code |
| flip_1_and_2 | Source code |
| flip_leaves | Man page Source code |
| flip_strings | Source code |
| get_all_leaves | Source code |
| get_branches_heights | Man page Source code |
| get_childrens_heights | Man page Source code |
| get_leaves_attr | Man page Source code |
| get_leaves_branches_attr | Man page Source code |
| get_leaves_branches_col | Man page Source code |
| get_leaves_edgePar | Man page Source code |
| get_leaves_nodePar | Man page Source code |
| get_nodes_attr | Man page Source code |
| get_nodes_xy | Man page Source code |
| get_root_branches_attr | Man page Source code |
| get_subdendrograms | Man page Source code |
| ggdend | Man page Source code |
| ggplot.dendrogram | Man page Source code |
| ggplot.ggdend | Man page Source code |
| hang.dendrogram | Man page Source code |
| has_component_in_attribute | Man page Source code |
| has_edgePar | Man page Source code |
| has_nodePar | Man page Source code |
| hc2axes | Source code |
| hc2split | Source code |
| head.dendlist | Source code |
| head.dendrogram | Source code |
| heights_per_k.dendrogram | Man page Source code |
| highlight_branches | Man page Source code |
| highlight_branches_col | Man page Source code |
| highlight_branches_lwd | Man page Source code |
| highlight_distinct_edges | Man page Source code |
| highlight_distinct_edges.dendlist | Man page Source code |
| highlight_distinct_edges.dendrogram | Man page Source code |
| identify.dendrogram | Man page Source code |
| intersect_trees | Man page Source code |
| is.dendlist | Man page Source code |
| is.dendrogram | Man page Source code |
| is.dist | Man page Source code |
| is.hclust | Man page Source code |
| is.infinite2 | Source code |
| is.natural.number | Man page Source code |
| is.phylo | Man page Source code |
| is_null_list | Man page Source code |
| is_some_class | Man page |
| khan | Man page |
| labels.hclust | Man page Source code |
| labels.phylo | Man page Source code |
| labels<- | Man page |
| labels<-.default | Man page |
| labels<-.dendrogram | Man page |
| labels<-.hclust | Man page |
| labels<-.phylo | Man page |
| labels_cex | Man page Source code |
| labels_cex<- | Man page |
| labels_col | Man page |
| labels_colors | Man page Source code |
| labels_colors<- | Man page |
| ladderize | Man page Source code |
| ladderize.dendlist | Man page Source code |
| ladderize.dendrogram | Man page Source code |
| ladderize.phylo | Man page Source code |
| leaf_Colors | Man page Source code |
| leaf_colors | Man page |
| lowest_common_branch | Man page Source code |
| lty_branches | Source code |
| map_values_to_scale | Source code |
| match_order_by_labels | Man page Source code |
| match_order_dendrogram_by_old_order | Man page Source code |
| max_depth | Man page Source code |
| max_labels_height | Source code Source code |
| min_depth | Man page Source code |
| na_locf | Man page Source code |
| nleaves | Man page Source code |
| nleaves.default | Man page Source code |
| nleaves.dendlist | Man page Source code |
| nleaves.dendrogram | Man page Source code |
| nleaves.hclust | Man page Source code |
| nleaves.phylo | Man page Source code |
| nnodes | Man page Source code |
| nnodes.default | Man page Source code |
| nnodes.dendrogram | Man page Source code |
| nnodes.hclust | Man page Source code |
| nnodes.phylo | Man page Source code |
| noded_with_condition | Man page Source code |
| nodes_with_shared_labels | Source code |
| normalize | Source code |
| order.dendrogram<- | Man page |
| order.hclust | Man page Source code |
| pamk | Source code |
| partition_leaves | Man page Source code |
| place_labels | Man page Source code |
| plot.dendlist | Man page Source code |
| plot.find_k | Man page Source code |
| plotNode2 | Source code |
| plotNodeLimit2 | Source code |
| plotNode_horiz | Source code |
| plot_horiz.dendrogram | Man page Source code |
| prepare.ggdend | Man page Source code |
| print.ggdend | Man page Source code |
| prune | Man page Source code |
| prune.default | Man page Source code |
| prune.dendrogram | Man page Source code |
| prune.hclust | Man page Source code |
| prune.phylo | Man page Source code |
| prune.rpart | Man page Source code |
| prune_common_subtrees.dendlist | Man page Source code |
| prune_leaf | Man page Source code |
| pvclust_edges | Man page Source code |
| pvclust_show_signif | Man page Source code |
| pvclust_show_signif_gradient | Man page Source code |
| pvrect2 | Man page Source code |
| rainbow_fun | Source code |
| raise.dendrogram | Man page Source code |
| rank_branches | Man page Source code |
| rank_order.dendrogram | Man page Source code |
| rank_values_with_clusters | Man page Source code |
| rect.dendrogram | Man page Source code |
| reexports | Man page |
| reindex_dend | Man page Source code |
| remove_branches_edgePar | Man page Source code |
| remove_dendextend_options | Source code |
| remove_leaves_nodePar | Man page Source code |
| remove_nodes_nodePar | Man page Source code |
| remove_pipes_and_zzz | Source code |
| remove_zzz | Source code |
| replace_unique_items_with_0_and_rank | Source code |
| rescale | Source code Source code |
| rev.hclust | Man page Source code |
| rllply | Man page Source code |
| rotate | Man page Source code |
| rotate.default | Man page Source code |
| rotate.dendrogram | Man page Source code |
| rotate.hclust | Man page Source code |
| rotate.phylo | Man page Source code |
| rotate_DendSer | Man page Source code |
| rotated_str_dim | Source code Source code |
| sample.dendrogram | Man page Source code |
| seriate_dendrogram | Man page Source code |
| set | Man page Source code |
| set.data.table | Man page Source code |
| set.dendlist | Man page Source code |
| set.dendrogram | Man page Source code |
| set_labels | Man page Source code |
| shuffle | Man page Source code |
| shuffle.default | Man page Source code |
| shuffle.dendlist | Man page Source code |
| shuffle.dendrogram | Man page |
| shuffle.hclust | Man page |
| shuffle.phylo | Man page |
| sort.dendlist | Man page Source code |
| sort.dendrogram | Man page Source code |
| sort.hclust | Man page Source code |
| sort_2_clusters_vectors | Man page Source code |
| sort_dist_mat | Man page Source code |
| sort_levels_values | Man page Source code |
| squash_dendrogram | Source code |
| stats_.memberDend | Source code |
| stats_.midDend | Source code |
| stats_midcache.dendrogram | Source code |
| stats_plotNode | Source code |
| stats_plotNodeLimit | Source code |
| strheight2 | Source code |
| strwidth2 | Source code |
| tanglegram | Man page Source code |
| tanglegram.default | Man page Source code |
| tanglegram.dendlist | Man page Source code |
| tanglegram.dendrogram | Man page Source code |
| tanglegram.hclust | Man page Source code |
| tanglegram.phylo | Man page Source code |
| text.pvclust | Source code |
| theme_dendro | Man page Source code |
| unbranch | Man page Source code |
| unbranch.default | Man page Source code |
| unbranch.dendrogram | Man page Source code |
| unbranch.hclust | Man page Source code |
| unbranch.phylo | Man page Source code |
| unclass_dend | Man page Source code |
| untangle | Man page Source code |
| untangle.default | Man page Source code |
| untangle.dendlist | Man page Source code |
| untangle.dendrogram | Man page Source code |
| untangle_DendSer | Man page Source code |
| untangle_best_k_to_rotate_by_1side | Source code |
| untangle_best_k_to_rotate_by_2side_backNforth | Source code |
| untangle_evolution | Source code |
| untangle_intercourse | Source code |
| untangle_intercourse_evolution | Source code |
| untangle_labels | Man page Source code |
| untangle_random_search | Man page Source code |
| untangle_step_rotate_1side | Man page Source code |
| untangle_step_rotate_2side | Man page Source code |
| which_leaf | Man page Source code |
| which_node | Man page Source code |
| zero_range | Source code Source code |
