API for dendextend
Extending 'Dendrogram' Functionality in R

Global functions
Bk Man page Source code
Bk_permutations Man page Source code
Bk_plot Man page Source code
DendSer.dendrogram Man page Source code
FM_index Man page Source code
FM_index_R Man page Source code
FM_index_permutation Man page Source code
FM_index_profdpm Man page Source code
Size.dist Source code
\%>\% Man page
add_zzz Source code
all.equal.dendlist Man page Source code
all.equal.dendrogram Man page Source code
allNA Source code
all_couple_rotations_at_k Man page Source code
all_unique Man page Source code
as.dendlist Man page Source code
as.dendrogram.phylo Source code
as.dendrogram.pvclust Source code
as.dendrogram.varclus Source code
as.ggdend Man page Source code
as.ggdend.dendrogram Man page Source code
as.hclust.pvclust Source code
as.json.dendrogram Source code
as.phylo Source code
as.phylo.dendrogram Man page Source code
as_hclust_fixed Man page Source code
assign_dendextend_options Man page Source code
assign_values_to_branches_edgePar Man page Source code
assign_values_to_leaves_edgePar Man page Source code
assign_values_to_leaves_nodePar Man page Source code
assign_values_to_nodes_nodePar Man page Source code
bakers_gamma_for_2_k_matrix Man page Source code
branches_attr_by_clusters Man page Source code
branches_attr_by_labels Man page Source code
branches_color Man page
circlize_dendrogram Man page Source code
click_rotate Man page Source code
click_rotate.default Man page Source code
click_rotate.dendrogram Man page Source code
collapse_branch Man page Source code
collapse_pipes_zzz Source code
collapse_with_pipes Source code
color_branches Man page Source code
color_branches_by_clusters Source code
color_labels Man page Source code
color_labels_by_labels Source code
color_unique_labels Man page Source code
colored_bars Man page Source code
colour_branches Man page
colour_labels Man page
common_subtrees_clusters Man page Source code
cor.dendlist Man page Source code
cor_FM_index Man page Source code
cor_bakers_gamma Man page Source code
cor_bakers_gamma.default Man page Source code
cor_bakers_gamma.dendlist Man page Man page Source code
cor_bakers_gamma.dendrogram Man page Man page Source code
cor_bakers_gamma.hclust Man page Man page Source code
cor_common_nodes Man page Source code
cor_cophenetic Man page Source code
cor_cophenetic.default Man page Source code
cor_cophenetic.dendlist Man page Source code
count_terminal_nodes Man page Source code
cut_lower_fun Man page Source code
cutree Man page Source code
cutree.default Man page Source code
cutree.dendrogram Man page Source code
cutree.hclust Man page Source code
cutree.phylo Man page Source code
cutree_1h.dendrogram Man page Source code
cutree_1k.dendrogram Man page Source code
d3dendro_defaults Source code
d3dendro_options Man page Source code
d3dendro_template Source code
d3dendrogram Man page Source code
dend_diff Man page Source code
dend_diff.dendlist Man page Source code
dend_diff.dendrogram Man page Source code
dend_expend Man page Source code
dendbackback Man page
dendextend Man page
dendextend-package Man page
dendextendWelcomeMessage Source code
dendextend_cut_lower_fun Man page Source code
dendextend_get_branches_heights Man page Source code
dendextend_heights_per_k.dendrogram Man page Source code
dendextend_labels.dendrogram Man page Source code
dendextend_options Man page
dendlist Man page Source code
dendrogram_data Source code
dist.dendlist Man page Source code
dist_long Man page Source code
distinct_edges Man page Source code
duplicate_leaf Man page Source code
edgeset_dist Source code
entanglement Man page Source code
entanglement.default Source code
entanglement.dendlist Man page Source code
entanglement.dendrogram Man page Source code
entanglement.hclust Man page Source code
entanglement.phylo Man page Source code
entanglement_return_best_brother Source code
fac2num Man page Source code
find_dend Man page Source code
find_k Man page Source code
fix_members_attr.dendrogram Man page Source code
flatten.dendrogram Man page Source code
flip_1_and_2 Source code
flip_leaves Man page Source code
flip_strings Source code
get_all_leaves Source code
get_branches_heights Man page Source code
get_childrens_heights Man page Source code
get_leaves_attr Man page Source code
get_leaves_branches_attr Man page Source code
get_leaves_branches_col Man page Source code
get_leaves_edgePar Man page Source code
get_leaves_nodePar Man page Source code
get_nodes_attr Man page Source code
get_nodes_xy Man page Source code
get_root_branches_attr Man page Source code
ggdend Man page Source code
ggplot.dendrogram Man page Source code
ggplot.ggdend Man page Source code
hang.dendrogram Man page Source code
has_component_in_attribute Man page Source code
has_edgePar Man page Source code
has_nodePar Man page Source code
hc2axes Source code
hc2split Source code
head.dendlist Source code
head.dendrogram Source code
heights_per_k.dendrogram Man page Source code
highlight_branches Man page Source code
highlight_branches_col Man page Source code
highlight_branches_lwd Man page Source code
highlight_distinct_edges Man page Source code
highlight_distinct_edges.dendlist Man page Source code
highlight_distinct_edges.dendrogram Man page Source code
identify.dendrogram Man page Source code
intersect_trees Man page Source code
is.dendlist Man page Source code
is.dendrogram Man page Source code
is.dist Man page Source code
is.hclust Man page Source code
is.infinite2 Source code
is.natural.number Man page Source code
is.phylo Man page Source code
is_null_list Man page Source code
is_some_class Man page
khan Man page
labels.dendrogram Source code
labels.hclust Man page Source code
labels.phylo Man page Source code
labels<- Man page
labels<-.default Man page
labels<-.dendrogram Man page
labels<-.hclust Man page
labels<-.phylo Man page
labels_cex Man page Source code
labels_cex<- Man page
labels_col Man page
labels_colors Man page Source code
labels_colors<- Man page
ladderize Man page Source code
ladderize.dendlist Man page Source code
ladderize.dendrogram Man page Source code
ladderize.phylo Man page Source code
leaf_Colors Man page Source code
leaf_colors Man page
lowest_common_branch Man page Source code
lty_branches Source code
map_values_to_scale Source code
match_order_by_labels Man page Source code
match_order_dendrogram_by_old_order Man page Source code
max_depth Man page Source code
max_labels_height Source code
midDend2 Source code
min_depth Man page Source code
na_locf Man page Source code
nleaves Man page Source code
nleaves.default Man page Source code
nleaves.dendlist Man page Source code
nleaves.dendrogram Man page Source code
nleaves.hclust Man page Source code
nleaves.phylo Man page Source code
nnodes Man page Source code
nnodes.default Man page Source code
nnodes.dendrogram Man page Source code
nnodes.hclust Man page Source code
nnodes.phylo Man page Source code
noded_with_condition Man page Source code
nodes_with_shared_labels Source code
normalize Source code
onAttach Source code
onLoad Source code
order.dendrogram<- Man page
order.hclust Man page Source code
partition_leaves Man page Source code
place_labels Man page Source code
plot.dendlist Man page Source code
plot.find_k Man page Source code
plotNode2 Source code
plotNodeLimit2 Source code
plotNode_horiz Source code
plot_horiz.dendrogram Man page Source code
prepare.ggdend Man page Source code
print.ggdend Man page Source code
prune Man page Source code
prune.default Man page Source code
prune.dendrogram Man page Source code
prune.hclust Man page Source code
prune.phylo Man page Source code
prune.rpart Man page Source code
prune_common_subtrees.dendlist Man page Source code
prune_leaf Man page Source code
pvclust_show_signif Man page Source code
pvclust_show_signif_gradient Man page Source code
pvrect2 Man page Source code
rainbow_fun Source code
raise.dendrogram Man page Source code
rank_branches Man page Source code
rank_order.dendrogram Man page Source code
rank_values_with_clusters Man page Source code
rect.dendrogram Man page Source code
reexports Man page
reindex_dend Man page Source code
remove_branches_edgePar Man page Source code
remove_dendextend_options Source code
remove_leaves_nodePar Man page Source code
remove_nodes_nodePar Man page Source code
remove_pipes_and_zzz Source code
remove_zzz Source code
replace_unique_items_with_0_and_rank Source code
rescale Source code
rev.hclust Man page Source code
rllply Man page Source code
rotate Man page Source code
rotate.default Man page Source code
rotate.dendrogram Man page Source code
rotate.hclust Man page Source code
rotate.phylo Man page Source code
rotate_DendSer Man page Source code
rotated_str_dim Source code
sample.dendrogram Man page Source code
seriate_dendrogram Man page Source code
set Man page Source code
set.data.table Man page Source code
set.dendlist Man page Source code
set.dendrogram Man page Source code
set_labels Man page Source code
shuffle Man page Source code
shuffle.default Man page Source code
shuffle.dendlist Man page Source code
shuffle.dendrogram Man page
shuffle.hclust Man page
shuffle.phylo Man page
sort.dendlist Man page Source code
sort.dendrogram Man page Source code
sort.hclust Man page Source code
sort_2_clusters_vectors Man page Source code
sort_dist_mat Man page Source code
sort_levels_values Man page Source code
stats_.memberDend Source code
stats_.midDend Source code
stats_midcache.dendrogram Source code
stats_plotNode Source code
stats_plotNodeLimit Source code
strheight2 Source code
strwidth2 Source code
tanglegram Man page Source code
tanglegram.default Man page Source code
tanglegram.dendlist Man page Source code
tanglegram.dendrogram Man page Source code
tanglegram.hclust Man page Source code
tanglegram.phylo Man page Source code
text.pvclust Source code
theme_dendro Man page Source code
unbranch Man page Source code
unbranch.default Man page Source code
unbranch.dendrogram Man page Source code
unbranch.hclust Man page Source code
unbranch.phylo Man page Source code
unclass_dend Man page Source code
untangle Man page Source code
untangle.default Man page Source code
untangle.dendlist Man page Source code
untangle.dendrogram Man page Source code
untangle_DendSer Man page Source code
untangle_best_k_to_rotate_by_1side Source code
untangle_best_k_to_rotate_by_2side_backNforth Source code
untangle_evolution Source code
untangle_intercourse Source code
untangle_intercourse_evolution Source code
untangle_labels Man page Source code
untangle_random_search Man page Source code
untangle_step_rotate_1side Man page Source code
untangle_step_rotate_2side Man page Source code
which_leaf Man page Source code
which_node Man page Source code
zero_range Source code
dendextend documentation built on Nov. 17, 2017, 4:29 a.m.