Man pages for designGG
Computational tool for designing genetical genomics experiments.
| acceptanceProbability | Compute the acceptance probability for each updated design |
| arrayUpdate | Update array allocation |
| conditionAllocation | Allocate the selected RILs into different conditions |
| conditionCombination | Generate a matrix indicating all possible levels for... |
| conditionLevel | Levels of all environmental factors |
| conditionUpdate | Update condition allocation |
| designGG | Optimal design for genetical genomics experiments |
| designGG-internal | Internal designGG functions |
| designScore | Calculate the A- or D- optimality score based on current... |
| exampleArrayDesignTable | Example output of ArrayDesignTable data |
| exampleConditionDesignTable | Example ConditionDesignTable data |
| examplePlotObj | Example PlotObj data |
| experimentDesignTable | Make experiment table based design matrix |
| genotype | Example genotype data |
| initialDesign | Initialize an experiment design matrix |
| interactionLevel | Generate levels for all interacting factors |
| pairLevel | Pair levels for paired RILs (or strains) |
| plotAllScores | Plot scores profiles |
| temperatureStep | Calculate the temperature decreasing step for simulated... |
| updateDesign | Updates current design |
| variableNames | Generate variable names for all factors |
| variableNumber | Compute the number of variables in the experiment |
