exampleArrayDesignTable: Example output of ArrayDesignTable data

In designGG: Computational tool for designing genetical genomics experiments.

Description

exampleArrayDesignTable: Example data of exampleArrayDesignTable for a hypothetical dual-channel microarray experiment in which there are 100 strains (e.g. recombinant inbred lines) and 27 arrays available. Two environmental factors (temperature and cell type) are considered in this experiment. There are three levels for temperature (15, 24 and 29) and four levels for cell types (A,B,C,D). This table tells how to pair samples into arrays.

data(exampleArrayDesignTable) 
exampleArrayDesignTable[1:5,]

	Channel 1	Channel 2
array1	Strain28	Strain92
array2	Strain70	Strain47
array3	Strain22	Strain89
array4	Strain45	Strain15
array5	Strain52	Strain41

Usage

data(exampleArrayDesignTable)

Format

exampleArrayDesignTable: 27 arrays by two channels.

Author(s)

Yang Li <[e-mail]>, Gonzalo Vera <[e-mail]>
Rainer Breitling <[e-mail]>, Ritsert Jansen <[e-mail]>

Examples

  ##load the data
  data(exampleArrayDesignTable)
  
  ##view part of the the data
  exampleArrayDesignTable[1:5,]

designGG documentation built on May 2, 2019, 5:51 a.m.