arrayUpdate: Update array allocation
In designGG: Computational tool for designing genetical genomics experiments.

Description Usage Arguments Details Value Author(s) References See Also

Update the allocation of samples on the arrays. This is a subfunction needed for updateDesign, but is not directly used.

1	arrayUpdate(array.allocation, condition.allocation, nRILs, nSlides)

`array.allocation`	matrix with nArray rows and nRIL columns. Elements of 1/0 indicate this RIL (or strain) is/not selected for this array.
`condition.allocation`	matrix with nCondition rows and nRIL columns. Elements of 1/0 indicate this RIL (or strain) is/not selected for this condition.
`nRILs`	number of RILs or strains available for the experiment.
`nSlides`	total number of slides available for experiment.

This function is used only for designing a dual-channel experiment where samples need to be paired.

A list with the following two elements:
new.array.allocation: an updated array allocation table
new.condition.allocation: an updated condition allocation table

Yang Li <yang.li@rug.nl>, Gonzalo Vera <gonzalo.vera.rodriguez@gmail.com>
Rainer Breitling <r.breitling@rug.nl>, Ritsert Jansen <r.c.jansen@rug.nl>

Y. Li, R. Breitling and R.C. Jansen. Generalizing genetical genomics: the added value from environmental perturbation, Trends Genet (2008) 24:518-524.
Y. Li, M. Swertz, G. Vera, J. Fu, R. Breitling, and R.C. Jansen. designGG: An R-package and Web tool for the optimal design of genetical genomics experiments. BMC Bioinformatics 10:188(2009)
http://gbic.biol.rug.nl/designGG

updateDesign

designGG documentation built on May 2, 2019, 5:51 a.m.